## nipype-workflows

This repository consists of neuroimaging workflows written in nipype with a focus on the Portable Batch System (PBS) job scheduler.
It provides tools and documentation for BMC users using the services of UF's Researchcomputing (RC) group.

### Installation

In order to run the code provided in this repository the following software need to be avaliable:

 - PBS Job scheduler
 - Required Modules:
  - python (version 2.7.6)
  - nipype (version 0.8)
  - fsl (version 5.0.5)
  - mricron (version 6/2013)

Before running the code, the required modules need to be loaded as follows:

```
module load python/2.7.6
module load nipype/0.8
module load fsl/5.0.5
module load mricron/201306
```

### Contributors

 - Philip Chase
 - Mohan Katragadda
 - Ruchi Desai

### License

New BSD License which can be found in the [LICENSE file](https://github.com/ctsit/nipype-pbs-workflows/blob/master/LICENSE)

## nipype-workflows

This repository consists of neuroimaging workflows written in nipype with a focus on the Portable Batch System (PBS) job scheduler.
It provides tools and documentation to neuroscientists for using the services of UF's Research Computing (RC) group.

### Installation

In order to run the code provided in this repository the following software need to be available:

 - PBS Job scheduler
 - Required Modules:
  - python (version 2.7.6)
  - nipype (version 0.8)
  - fsl (version 5.0.5)
  - mricron (version 6/2013)

Before running the code, the required modules need to be loaded as follows:

```
module load python/2.7.6
module load nipype/0.8
module load fsl/5.0.5
module load mricron/201306
```

### Contributors

 - Philip Chase
 - Mohan Katragadda
 - Ruchi Desai

### License

New BSD License which can be found in the [LICENSE file](https://github.com/ctsit/nipype-pbs-workflows/blob/master/LICENSE)

Make changes suggested in pull request comments
Make changes suggested in pull request comments
