# psy-5xx-reproducible-research-outline.md

## Sources

- [PSY Psychology Transparency Page](../transparency/README.md)
- Textbook(s)
    + Gandrud, C. (2013). Reproducible Research with R and R Studio. CRC Press.<https://www.crcpress.com/Reproducible-Research-with-R-and-R-Studio/Gandrud/9781466572843>
    + 

## Topics

- What is transparent, open, and reproducible research?
- Case studies in questionable research practices
    + Stappel, Hauser, etc.
    + <http://simplystatistics.org/2013/04/19/podcast-7-reinhart-rogoff-reproducibility/>
    + <http://simplystatistics.org/2011/09/11/the-duke-saga/>
- Research workflows
    + Developing questions
        * Literature research
    + Designing studies
    + Collecting data
    + Merging data
    + Visualizing data
    + Analyzing data
    + Reporting results
- Components of transparent, open, and reproducible research workflows
- Risks and benefits of transparent, open, and reproducible research
- Examples of reproducible research analysis/reporting tools
    + <https://galaxyproject.org>
    + iPython/jupyter project
    + RStudio/RMarkdown

# psy-5xx-reproducible-research-outline.md

## Sources

- [PSY Psychology Transparency Page](https://github.com/psu-psychology/transparency/README.md)
- Textbook(s)
    + Gandrud, C. (2013). Reproducible Research with R and R Studio. CRC Press.<https://www.crcpress.com/Reproducible-Research-with-R-and-R-Studio/Gandrud/9781466572843>
    + 

## Topics

- What is transparent, open, and reproducible research?
- Case studies in questionable research practices
    + Stappel, Hauser, etc.
    + <http://simplystatistics.org/2013/04/19/podcast-7-reinhart-rogoff-reproducibility/>
    + <http://simplystatistics.org/2011/09/11/the-duke-saga/>
- Research workflows
    + Developing questions
        * Literature research
    + Designing studies
    + Collecting data
    + Merging data
    + Visualizing data
    + Analyzing data
    + Reporting results
- Components of transparent, open, and reproducible research workflows
- Risks and benefits of transparent, open, and reproducible research
- Examples of reproducible research analysis/reporting tools
    + <https://galaxyproject.org>
    + iPython/jupyter project
    + RStudio/RMarkdown

Fix link to Department transparency page
Fix link to Department transparency page