# nfcore/smrnaseq Documentation

The nfcore/smrnaseq documentation is split into the following files:


1. [Installation](installation.md)
2. Pipeline configuration
    * [Local installation](configuration/local.md)
    * [Amazon Web Services (aws)](configuration/aws.md)
    * [Swedish UPPMAX clusters](configuration/uppmax.md)
    * [Swedish cs3e Hebbe cluster](configuration/c3se.md)
    * [Tübingen QBiC](configuration/qbic.md)
    * [CCGA Kiel](configuration/ccga.md)
    * [Adding your own system](configuration/adding_your_own.md)
3. [Running the pipeline](usage.md)
4. [Output and how to interpret the results](output.md)
5. [Troubleshooting](troubleshooting.md)

Add - docs/readme.md - docs/usage.md
Add
- docs/readme.md
- docs/usage.md
