# Papers 

## High-throughput, ChIP-seq 
  * [Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data](
     Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data)
  * [Practical impacts of genomic data “cleaning” on biological discovery using surrogate variable analysis](
     http://www.biomedcentral.com/1471-2105/16/372) 

## 3-D
  * [Reconstruction of 3D genome architecture via a two-stage algorithm](
     http://www.biomedcentral.com/1471-2105/16/373)



Add place to store links to papers.
Add place to store links to papers.
