![NINJA CI](https://github.com/TravisWheelerLab/NINJA/workflows/NINJA%20CI/badge.svg)

# NINJA

Nearly Infinite Neighbor Joining Application

## About

TODO: Information from Travis... history, Java version, publication(s)

## Development

Clone the code. If you're on a Mac, you can run `make setup-mac` to install most
of the required tools through [Homebrew](http://brew.sh). This includes:

  - [compiledb](https://github.com/nickdiego/compiledb)
  - [doxygen](https://www.doxygen.nl)
  - [pipenv](https://github.com/pypa/pipenv)
  - Python 3.8 or greater

Contributions are welcomed. To do this, fork the repo, create a branch and, once
you're ready, create a pull request from your branch into the `master` branch in
the main repo.

## Authors

  - Travis Wheeler <travis.wheeler@umontana.edu>
  - Michel Wan Der Maas Soares
  - George Lesica <george.lesica@umontana.edu>

![NINJA CI](https://github.com/TravisWheelerLab/NINJA/workflows/NINJA%20CI/badge.svg)

[API Documentation](https://wheelerlab.org/NINJA/)

# NINJA

Nearly Infinite Neighbor Joining Application

## About

TODO: Information from Travis... history, Java version, publication(s)

## Development

Clone the code. If you're on a Mac, you can run `make setup-mac` to install most
of the required tools through [Homebrew](http://brew.sh). This includes:

  - [compiledb](https://github.com/nickdiego/compiledb)
  - [doxygen](https://www.doxygen.nl)
  - [pipenv](https://github.com/pypa/pipenv)
  - Python 3.8 or greater

Contributions are welcomed. To do this, fork the repo, create a branch and, once
you're ready, create a pull request from your branch into the `master` branch in
the main repo.

## Authors

  - Travis Wheeler <travis.wheeler@umontana.edu>
  - Michel Wan Der Maas Soares
  - George Lesica <george.lesica@umontana.edu>

Add link to api docs
Add link to api docs
