#!/bin/bash

export C_INCLUDE_PATH=${PREFIX}/include
export LIBRARY_PATH=${PREFIX}/lib

(
	cd ext
	rm -fr htslib
	git clone git://github.com/samtools/htslib
)


make
mkdir -p $PREFIX/bin
cp ococo $PREFIX/bin
cp ococo.1 ${PREFIX}/share/man/man1


#!/bin/bash

export C_INCLUDE_PATH=${PREFIX}/include
export CPPFLAGS="-I$PREFIX/include"
export CPLUS_INCLUDE_PATH=${PREFIX}/include
export LIBRARY_PATH=${PREFIX}/lib

(
	cd ext
	rm -fr htslib
	git clone git://github.com/samtools/htslib
)


make
mkdir -p $PREFIX/bin
cp ococo $PREFIX/bin
cp ococo.1 ${PREFIX}/share/man/man1


Add include paths to other variables
Add include paths to other variables
