#!/bin/bash

galaxy_tool_dir=$1
tool_dir=$2
db_dir=$3

echo "Prepare tools"

#./src/prepare_galaxy_tools/prepare_assemble_paired_end_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_RDPTools_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_genometools_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_cluster_sequence_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_manipulate_rna_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_assigne_taxonomy_to_non_rRNA_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_assigne_taxonomy_to_rRNA_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_analyze_metabolism_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir \
#    $db_dir

echo ""





#!/bin/bash

galaxy_tool_dir=$1
tool_dir=$2
db_dir=$3

echo "Prepare tools"

#./src/prepare_galaxy_tools/prepare_assemble_paired_end_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_RDPTools_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_genometools_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_manipulate_rna_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_assigne_taxonomy_to_non_rRNA_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_assigne_taxonomy_to_rRNA_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir

#./src/prepare_galaxy_tools/prepare_analyze_metabolism_tools.sh \
#    $galaxy_tool_dir \
#    $tool_dir \
#    $db_dir

echo ""





Remove link to prepare cluster sequence
Remove link to prepare cluster sequence
