#!/bin/bash

perl $GCA_TOOLS/literature_mining/scripts/literature_mining.ebisc.pl -user $IMS_USER -pass $IMS_PASS -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/ebisc.tsv \
&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.hipsci.pl -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/hipsci.tsv \
&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.igsr.pl -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/igsr.tsv \
#&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.hpscreg.pl -user $HPSCREG_USER -pass $HPSCREG_PASS -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/hpscreg.tsv
#!/bin/bash

perl $GCA_TOOLS/literature_mining/scripts/literature_mining.hipsci.pl -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/hipsci.tsv \
&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.igsr.pl -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/igsr.tsv \
&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.ebisc.pl -user $IMS_USER -pass $IMS_PASS -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/ebisc.tsv \
#&& perl $GCA_TOOLS/literature_mining/scripts/literature_mining.hpscreg.pl -user $HPSCREG_USER -pass $HPSCREG_PASS -outfile /nfs/production/reseq-info/work/rseqpipe/literature_mining_IDs/hpscreg.tsv
Change order of literature mining scripts
Change order of literature mining scripts
