# alignlib - a library for aligning protein sequences
# 
# $Id$
# 
# Copyright (C) 2004 Andreas Heger
# 
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
# 
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
# 
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
#
import unittest, ConfigParser
from pairsdblib import *

class MultipleAlignmentTestCase( unittest.TestCase ):

    def setUp( self ):

        config = ConfigParser.ConfigParser()
        config.read('test.conf')
        
        self.mConnection  = Connection( config["default"]["host"],
                                        config["default"]["user"],
                                        config["default"]["password"],
                                        config["default"]["port"] )

        self.mConnection.Connect( config["default"]["database"] )

        
class MultipleAlignmentNeighboursTestCase( MultipleAlignmentTestCase ):

    def setUp( self ):
        MultipleAlignmentTestCase.setUp( self)

        self.mMali = makeMultipleAlignmentNeighbours( self.mConnection,
                                                      int(config["default"]["neighbours_nid"]),
                                                      config["default"]["neighbours_table"])
        

def suite():
    suite = unittest.TestSuite()
    suite.addTest(MultipleAlignmentNeighboursTestCase)
    return suite

if __name__ == "__main__":
    unittest.main()
