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Datasets:
YongchengYAO
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TotalSegmentator-MR-Lite

Tasks:
Image Segmentation
Modalities:
Image
Languages:
English
Size:
n<1K
Tags:
medical
image
License:
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metadata
license: cc-by-nc-sa-2.0
task_categories:
  - image-segmentation
language:
  - en
tags:
  - medical
  - image
pretty_name: totalsegmentator-mr-lite
size_categories:
  - n<1K

About

This is a derivative of the TotalSegmentator dataset

  • 616 MR images and corresponding segmentation mask of 50 structures
  • We combined multiple segmentation masks into a single nii.gz file under the folder Masks, and moved all MR images to the folder Images.
  • All images and masks are renamed according to case IDs.

This dataset is released under the CC BY-NC-SA 2.0 license.

Official Release

Download from Huggingface 

#!/bin/bash
pip install huggingface-hub[cli]
huggingface-cli login --token $HF_TOKEN

# python
from huggingface_hub import snapshot_download
snapshot_download(repo_id="YongchengYAO/TotalSegmentator-MR-Lite", repo_type='dataset', local_dir="/your/local/folder")

Segmentation Labels 

labels_MR = {
    1: "spleen",
    2: "kidney_right",
    3: "kidney_left",
    4: "gallbladder",
    5: "liver",
    6: "stomach",
    7: "pancreas",
    8: "adrenal_gland_right",
    9: "adrenal_gland_left",
    10: "lung_left",
    11: "lung_right",
    12: "esophagus",
    13: "small_bowel",
    14: "duodenum",
    15: "colon",
    16: "urinary_bladder",
    17: "prostate",
    18: "sacrum",
    19: "vertebrae",
    20: "intervertebral_discs",
    21: "spinal_cord",
    22: "heart",
    23: "aorta",
    24: "inferior_vena_cava",
    25: "portal_vein_and_splenic_vein",
    26: "iliac_artery_left",
    27: "iliac_artery_right",
    28: "iliac_vena_left",
    29: "iliac_vena_right",
    30: "humerus_left",
    31: "humerus_right",
    32: "scapula_left",
    33: "scapula_right",
    34: "clavicula_left",
    35: "clavicula_right",
    36: "femur_left",
    37: "femur_right",
    38: "hip_left",
    39: "hip_right",
    40: "gluteus_maximus_left",
    41: "gluteus_maximus_right",
    42: "gluteus_medius_left",
    43: "gluteus_medius_right",
    44: "gluteus_minimus_left",
    45: "gluteus_minimus_right",
    46: "autochthon_left",
    47: "autochthon_right",
    48: "iliopsoas_left",
    49: "iliopsoas_right",
    50: "brain"
}