<p dir="auto">This was closed improperly.</p>
<p dir="auto">New wheels were placed on PyPI on 6/28.  numpy wheels are new as of 6/19.  I just reinstalled on 8/4, which picked up both new wheels.  One or the other is the problem.  This is OPEN.  Whenever binary builds are placed in a public place for widespread download, great caution and extensive testing of dependencies is in order.</p>
<p dir="auto">Rebuilding these seems to cause:</p>
<p dir="auto">/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/_continuous_distns.py:24: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from . import vonmises_cython<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/_continuous_distns.py:24: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from . import vonmises_cython<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/stats.py:188: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from ._rank import rankdata, tiecorrect<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/stats.py:188: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from ._rank import rankdata, tiecorrect<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/interpolate.py:28: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from . import _ppoly<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/interpolate.py:28: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from . import _ppoly<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:90: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from .ckdtree import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:90: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from .ckdtree import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:91: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from .qhull import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:91: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from .qhull import *</p>
<p dir="auto">Two days I reinstalled everything (Python plus all modules) and started getting these warnings:</p>
<p dir="auto">/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/_continuous_distns.py:24: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from . import vonmises_cython<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/_continuous_distns.py:24: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from . import vonmises_cython<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/stats.py:188: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from ._rank import rankdata, tiecorrect<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/stats/stats.py:188: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from ._rank import rankdata, tiecorrect<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/interpolate.py:28: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from . import _ppoly<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/interpolate/interpolate.py:28: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from . import _ppoly<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:90: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from .ckdtree import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:90: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from .ckdtree import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:91: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility<br>
from .qhull import *<br>
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scipy/spatial/<strong>init</strong>.py:91: RuntimeWarning: numpy.ufunc size changed, may indicate binary incompatibility<br>
from .qhull import *</p>
<p dir="auto">I had never experienced this before.  Was there recently a rev of scipy?   Big time regression perhaps?</p>
<p dir="auto">Or is there an order of installation problem.</p>
<p dir="auto">My config is python 2.7.8 from Python.org.  On Mac OS X 10.9.4</p>
<p dir="auto">pip list:<br>
altgraph (0.12)<br>
argparse (1.2.1)<br>
astroid (1.2.0)<br>
backports.ssl-match-hostname (3.4.0.2)<br>
certifi (14.05.14)<br>
Cython (0.20.2)<br>
docutils (0.12)<br>
gnureadline (6.3.3)<br>
ipython (2.1.0)<br>
jdcal (1.0)<br>
Jinja2 (2.7.3)<br>
logilab-common (0.62.1)<br>
macholib (1.7)<br>
MarkupSafe (0.23)<br>
matplotlib (1.3.1)<br>
mock (1.0.1)<br>
modulegraph (0.12)<br>
nose (1.3.3)<br>
numexpr (2.4)<br>
numpy (1.8.1)<br>
openpyxl (2.0.4)<br>
pandas (0.14.1)<br>
patsy (0.3.0)<br>
pep8 (1.5.7)<br>
Pillow (2.5.1)<br>
pip (1.5.6)<br>
psutil (2.1.1)<br>
py (1.4.23)<br>
py2app (0.9)<br>
pyflakes (0.8.1)<br>
Pygments (1.6)<br>
pylint (1.3.0)<br>
pyparsing (2.0.2)<br>
pytest (2.6.0)<br>
python-dateutil (2.2)<br>
pytz (2014.4)<br>
pyzmq (14.3.1)<br>
rope (0.10.2)<br>
Scidoc (1.8.0)<br>
scikit-learn (0.15.1)<br>
scipy (0.14.0)<br>
seaborn (0.3.1)<br>
setuptools (5.4.2)<br>
simplejson (3.6.0)<br>
six (1.7.3)<br>
Sphinx (1.2.2)<br>
spyder (2.3.0)<br>
statsmodels (0.5.0)<br>
stevedore (0.15)<br>
sympy (0.7.5)<br>
tornado (4.0)<br>
virtualenv (1.11.6)<br>
virtualenv-clone (0.2.5)<br>
virtualenvwrapper (4.3.1)<br>
wsgiref (0.1.2)<br>
xlrd (0.9.3)<br>
XlsxWriter (0.5.6)<br>
xlwt (0.7.5)</p>
<p dir="auto">I am trying to perfect an automated installer script and I want to get the right order of installation to prevent this (I've used this script many times and not had this problem previously.).</p>