Toycat/scLibrary · Datasets at Hugging Face

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train

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The dataset generation failed

Error code:   DatasetGenerationError
Exception:    CastError
Message:      Couldn't cast
input_ids: list<item: int16>
  child 0, item: int16
soma_joinid: int64
dataset_id: string
assay: string
assay_ontology_term_id: string
cell_type: string
cell_type_ontology_term_id: string
development_stage: string
development_stage_ontology_term_id: string
disease: string
disease_ontology_term_id: string
donor_id: string
is_primary_data: bool
self_reported_ethnicity: string
self_reported_ethnicity_ontology_term_id: string
sex: string
sex_ontology_term_id: string
suspension_type: string
tissue: string
tissue_ontology_term_id: string
tissue_general: string
tissue_general_ontology_term_id: string
fulltext: string
length: int64
-- schema metadata --
huggingface: '{"info": {"features": {"input_ids": {"feature": {"dtype": "' + 1412
to
{'indices': Value(dtype='uint64', id=None)}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1854, in _prepare_split_single
                  for _, table in generator:
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 686, in wrapped
                  for item in generator(*args, **kwargs):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/arrow/arrow.py", line 76, in _generate_tables
                  yield f"{file_idx}_{batch_idx}", self._cast_table(pa_table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/arrow/arrow.py", line 59, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              input_ids: list<item: int16>
                child 0, item: int16
              soma_joinid: int64
              dataset_id: string
              assay: string
              assay_ontology_term_id: string
              cell_type: string
              cell_type_ontology_term_id: string
              development_stage: string
              development_stage_ontology_term_id: string
              disease: string
              disease_ontology_term_id: string
              donor_id: string
              is_primary_data: bool
              self_reported_ethnicity: string
              self_reported_ethnicity_ontology_term_id: string
              sex: string
              sex_ontology_term_id: string
              suspension_type: string
              tissue: string
              tissue_ontology_term_id: string
              tissue_general: string
              tissue_general_ontology_term_id: string
              fulltext: string
              length: int64
              -- schema metadata --
              huggingface: '{"info": {"features": {"input_ids": {"feature": {"dtype": "' + 1412
              to
              {'indices': Value(dtype='uint64', id=None)}
              because column names don't match
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1412, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 988, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1897, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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indices uint64
14,340,059
14,340,561
14,341,066
14,341,098
14,342,958
14,344,068
14,344,243
14,344,463
14,344,508
14,344,540
14,344,713
14,344,771
14,345,335
14,345,590
14,345,618
14,345,787
14,345,906
14,346,285
14,346,421
14,346,457
14,359,356
14,359,545
14,359,691
14,359,789
14,360,037
14,360,358
14,360,415
14,360,665
14,360,679
14,360,779
14,360,960
14,361,108
14,361,150
14,361,175
14,361,485
14,361,722
14,361,786
14,361,906
14,361,934
14,362,102
14,362,139
14,362,215
14,362,229
14,362,281
14,362,313
14,362,325
14,362,386
14,362,445
14,362,511
14,362,546
14,362,592
14,362,597
14,362,622
14,362,690
14,362,730
14,362,793
14,362,812
14,362,834
14,362,837
14,362,949
14,362,951
14,362,959
14,362,977
14,362,989
14,363,030
14,363,122
14,363,134
14,363,157
14,363,158
14,363,213
14,363,255
14,363,261
14,363,327
14,363,408
14,363,429
14,363,473
14,363,564
14,363,583
14,363,634
14,363,635
14,363,639
14,363,666
14,363,723
14,363,733
14,363,765
14,363,790
14,363,798
14,363,827
14,363,831
14,363,848
14,363,899
14,363,900
14,364,015
14,364,122
14,364,125
14,364,149
14,364,172
14,364,173
14,364,187
14,364,226

End of preview.