# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
r"""
TBtrans
=======

File objects for interaction with the `TBtrans`_ code.

The TBtrans code is a tight-binding transport code implementing
the widely used non-equilibrium Green function method.

It is primarily implemented for the support of TranSiesta (DFT+NEGF)
as a backend for calculating transport for self-consistent DFT software.

Here we show a variety of supplement files that allows the extracting, manipulation
and creation of files supported in TBtrans.

The basic file is the `tbtncSileTBtrans` which is a file to extract information
from a TBtrans output file (typically named: ``siesta.TBT.nc``).
The following will interact with the TBtrans file:

>>> tbt = sisl.get_sile('siesta.TBT.nc')
>>> tbt.E
>>> tbt.a_d

Importantly one may retrieve quantities such as DOS, transmissions,
transmission eigenvalues etc.

>>> tbt.transmission() # from electrode 0 -> 1 (default)
>>> tbt.transmission(0, 1) # from electrode 0 -> 1
>>> tbt.transmission(0, 2) # from electrode 0 -> 2
>>> tbt.ADOS(0, E=1.) # k-average, total spectral DOS from 0th electrode
>>> tbt.density_matrix(E=1.) # k-average, density matrix from Green function at 1. eV


The above extraction of data is the most frequent use of this module.

Data extraction files
^^^^^^^^^^^^^^^^^^^^^

- `tbtncSileTBtrans` (electron TBtrans output)
- `tbtavncSileTBtrans` (electron k-averaged TBtrans output)
- `tbtsencSileTBtrans` (electron TBtrans self-energy output)
- `tbtprojncSileTBtrans` (projected TBtrans output)


Support files to complement TBtrans
-----------------------------------
- `deltancSileTBtrans` adding :math:`\delta H` or :math:`\delta\Sigma` elements
  to a TBtrans calculation
- `tbtgfSileTBtrans` manual creation of the self-energies for TBtrans.


PHtrans
-------

PHtrans is the same program as TBtrans, it however uses the dynamical matrix to calculate
phonon transport.

- `phtncSilePHtrans` (phonon PHtrans output)
- `phtsencSilePHtrans` (phonon PHtrans self-energy output)
- `phtavncSilePHtrans` (phonon k-averaged PHtrans output)
- `phtprojncSilePHtrans` (projected PHtrans output)

"""
from .sile import * # isort: split
from .binaries import *
from .delta import *
from .pht import *
from .phtproj import *
from .se import *
from .tbt import *
from .tbtproj import *
