message: refactor: pass missing flag
  This flag is not used in Nextclade (only in Nextalign), but let's pass it through for consistency and to avoid an 'uninitialized field' warning.
diff: @@ -101,6 +101,8 @@ int main(int argc, char* argv[]) {
  .aaSeedSpacing = options.seedAa.seedSpacing,
  .aaMismatchesAllowed = options.seedAa.mismatchesAllowed,
  + .noTranslatePastStop = !options.translatePastStop,
  +
  .verbosity = {},
  .verbose = {},
  .silent = {},
  