message: update test_jog_calibrate test to reflect new calibration flow
diff: @@ -144,7 +144,10 @@ async def test_jog_calibrate(dummy_db, main_router, model):
  robot = model.robot
  container = model.container._container
  - pos1 = pose_tracker.change_base(robot.poses, src=container, dst=robot.deck)
  + pos1 = pose_tracker.change_base(
  + robot.poses,
  + src=container[0],
  + dst=robot.deck)
  coordinates1 = container.coordinates()
  main_router.calibration_manager.move_to(model.instrument, model.container)
  @@ -157,10 +160,21 @@ async def test_jog_calibrate(dummy_db, main_router, model):
  model.instrument
  )
  - pos2 = pose_tracker.absolute(robot.poses, container)
  + pos2 = pose_tracker.absolute(robot.poses, container[0])
  coordinates2 = container.coordinates()
  assert isclose(pos1 + (1, 2, 3), pos2).all()
  assert isclose(
  array([*coordinates1]) + (1, 2, 3),
  array([*coordinates2])).all()
  +
  + main_router.calibration_manager.pick_up_tip(
  + model.instrument,
  + model.container
  + )
  +
  + # NOTE: only check XY, as the instrument moves up after tip pickup
  + assert isclose(
  + pose_tracker.absolute(robot.poses, container[0])[:-1],
  + pose_tracker.absolute(robot.poses, model.instrument._instrument)[:-1]
  + ).all()
  