message: feat: extend cli param descriptions
diff: @@ -188,28 +188,28 @@ std::tuple<CliParams, NextalignOptions> parseCommandLine(
  (
  "score-gap-open",
  - "(optional) Score to favor alignments with open gaps",
  + "(optional) Score to favor alignments with open gaps. The higher the score the ...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().alignment.scoreGapOpen)),
  "SCORE_GAP_OPEN"
  )
  (
  "score-gap-open-in-frame",
  - "(optional) Score to favor alignments with open gaps when in codon",
  + "(optional) Score to favor alignments with open gaps when in codon. The higher the score the ...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().alignment.scoreGapOpenInFrame)),
  "SCORE_GAP_OPEN_IN_FRAME"
  )
  (
  "score-mismatch",
  - "(optional) Score to assign to mismatching nucleotides or aminoacids during alignment",
  + "(optional) Score to assign to mismatching nucleotides or aminoacids during alignment. The higher the score the ...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().alignment.scoreMismatch)),
  "SCORE_MISMATCH"
  )
  (
  "score-match",
  - "(optional) Score to assign to matching nucleotides or aminoacids during alignment",
  + "(optional) Score to assign to matching nucleotides or aminoacids during alignment. The higher the score the ...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().alignment.scoreMatch)),
  "SCORE_MATCH"
  )
  @@ -223,14 +223,14 @@ std::tuple<CliParams, NextalignOptions> parseCommandLine(
  (
  "nuc-seed-length",
  - "(optional) Seed length for nucleotide alignment. Indicates number of nucleotides in a seed.",
  + "(optional) Seed length for nucleotide alignment. Indicates number of nucleotides in a seed. There is a trade-off between the number of seeds and their size: <describe the tradeoff>...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().seedNuc.seedLength)),
  "NUC_SEED_LENGTH"
  )
  (
  "nuc-min-seeds",
  - "(optional) Minimum number of seeds to search for during nucleotide alignment.",
  + "(optional) Minimum number of seeds to search for during nucleotide alignment. There is a trade-off between the number of seeds and their size: <describe the tradeoff>...",
  cxxopts::value<int>()->default_value(std::to_string(getDefaultOptions().seedNuc.minSeeds)),
  "NUC_MIN_SEEDS"
  )
  