message: misc: relax SARS-CoV-2 QC parameters to account for increasing diversity of circulating virus
diff: @@ -3,8 +3,8 @@ import type { QCRulesConfig } from 'src/algorithms/QC/types'
  export const qcRulesConfig: QCRulesConfig = {
  privateMutations: {
  enabled: true,
  - typical: 5, // expected number of mutations
  - cutoff: 15, // trigger QC warning if the typical value exceeds this value
  + typical: 8, // expected number of mutations
  + cutoff: 24, // trigger QC warning if the typical value exceeds this value
  },
  missingData: {
  enabled: true,
  @@ -14,7 +14,7 @@ export const qcRulesConfig: QCRulesConfig = {
  snpClusters: {
  enabled: true,
  windowSize: 100, // window along the genome to look for a cluster
  - clusterCutOff: 4, // number of mutations within that window to trigger a cluster
  + clusterCutOff: 6, // number of mutations within that window to trigger a cluster
  scoreWeight: 50, // each cluster counts for 50
  },
  mixedSites: {
  