message: fix: mask peptides before stripping insertions from it
diff: @@ -156,7 +156,7 @@ PeptidesInternal translateGenes( //
  const auto queryPeptide = translate(queryGeneSeq, options.translatePastStop);
  - const auto geneAlignmentStatus =
  + auto geneAlignmentStatus =
  alignPairwise(queryPeptide, refPeptide, gapOpenCloseAA, options.alignment, options.seedAa);
  if (geneAlignmentStatus.status != Status::Success) {
  @@ -169,9 +169,9 @@ PeptidesInternal translateGenes( //
  continue;
  }
  - auto stripped = stripInsertions(geneAlignmentStatus.result->ref, geneAlignmentStatus.result->query);
  + maskPeptideFrameShiftsInPlace(geneAlignmentStatus.result->query, frameShiftResults);
  - maskPeptideFrameShiftsInPlace(stripped.queryStripped, frameShiftResults);
  + auto stripped = stripInsertions(geneAlignmentStatus.result->ref, geneAlignmentStatus.result->query);
  std::vector<FrameShiftResult> frameShiftResultsFinal = toExternal(frameShiftResults);
  