message: fix: change order of arguments that was causing incorrect mutations
diff: @@ -43,7 +43,7 @@ namespace Nextclade {
  const auto alignment = nextalignInternal(query, ref, geneMap, options.nextalignOptions);
  - auto nucChanges = findNucChanges(alignment.query, alignment.ref);
  + auto nucChanges = findNucChanges(alignment.ref, alignment.query);
  const int totalSubstitutions = safe_cast<int>(nucChanges.substitutions.size());
  const int totalDeletions = calculateTotalLength(nucChanges.deletions);
  const int totalInsertions = calculateTotalLength(alignment.insertions);
  