{AH} ignore header test in CRAM2CRAM, see
@@ -475,12 +475,17 @@ class TestIO(unittest.TestCase):
"rb", "wb")
def testCRAM2CRAM(self):
+ # in some systems different reference sequence paths might be
+ # embedded in the CRAM files which will result in different headers
+ # see #542
self.checkEcho("ex2.cram",
"ex2.cram",
"tmp_ex2.cram",
"rc", "wc",
sequence_filename=os.path.join(BAM_DATADIR, "ex1.fa"),
- checkf=check_samtools_view_equal)
+ checkf=partial(
+ check_samtools_view_equal,
+ without_header=True))
def testSAM2BAM(self):
self.checkEcho("ex2.sam",
