PR fixed parametersDefault description.
@@ -265,7 +265,7 @@ outStd Log
Log ... log messages
SAM ... alignments in SAM format (which normally are output to Aligned.out.sam file), normal standard output will go into Log.std.out
BAM_Unsorted ... alignments in BAM format, unsorted. Requires --outSAMtype BAM Unsorted
- BAM_SortedByCoordinate ... alignments in BAM format, unsorted. Requires --outSAMtype BAM SortedByCoordinate
+ BAM_SortedByCoordinate ... alignments in BAM format, sorted by coordinate. Requires --outSAMtype BAM SortedByCoordinate
BAM_Quant ... alignments to transcriptome in BAM format, unsorted. Requires --quantMode TranscriptomeSAM
outReadsUnmapped None
