Changed the minimum block size requirement to match velocyto's.
@@ -41,7 +41,7 @@ int alignToTranscript(Transcript &aG, uint trS1, uint8 trStr1, uint32 *exSE1, ui
bEt=bE=bS+aG.exons[iab][EX_L]-1;//block end
if ( minOverlapMinusOne>0 ) {
- if ( bEt-bSt < 2*minOverlapMinusOne ) {
+ if ( bEt-bSt < minOverlapMinusOne ) {
bEt=(uint32)-1;
continue;//this block is too short
};
