{AH} ignore samtools idxstats usage test
@@ -266,7 +266,8 @@ class SamtoolsTest(unittest.TestCase):
# ignore commands that exit or cause other failures
# TODO: check - if reheader or phase is run in testStatements, sort fails
# here
- if command in ("view", "sort", "bam2fq", "flagstat", "reheader", "stats"):
+ if command in ("view", "sort", "bam2fq", "flagstat", "reheader",
+ "stats", "idxstats"):
continue
mapped_command = self.get_command(statement, map_to_internal=True)
pysam_method = getattr(self.module, mapped_command)
