Fixed a problem with read name output in Chimeric.out.junction.
@@ -91,6 +91,7 @@ void ReadAlign::copyRead(ReadAlign &r) {//copy read information only
readLengthOriginal[0]=r.readLengthOriginal[0];readLengthOriginal[1]=r.readLengthOriginal[1];
readLengthPairOriginal=r.readLengthPairOriginal;
outFilterMismatchNmaxTotal=r.outFilterMismatchNmaxTotal;
+ readName=r.readName;
for (uint ii=0;ii<=2;ii++)
memcpy(Read1[ii],r.Read1[ii],Lread);//need to copy since it will be changed
