fix update docs. Thanks to and
@@ -37,7 +37,7 @@ Option Description
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**-fq2** FASTQ for second end. Used if BAM contains paired-end data.
BAM should be sorted by query name
- (``samtools sort -n aln.bam aln.qsort``) if creating
+ (``samtools sort -n -o aln.qsort.bam aln.bam``) if creating
paired FASTQ with this option.
**-tags** Create FASTQ based on the mate info in the BAM R2 and Q2 tags.
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