Issue 1339: clarified the --soloCellFilter EmptyDrops_CR warning message in case the *true empty* cells cannot be found.
@@ -10,7 +10,8 @@ double logMultinomialPDFsparse(const vector<double> &ambProfileLogP, const vecto
void SoloFeature::emptyDrops_CR()
{
if (nCB<=pSolo.cellFilter.eDcr.indMin) {
- P.inOut->logMain << "emptyDrops_CR filtering: no empty cells found: nCB=" << nCB <<" emptyCellMinIndex="<< pSolo.cellFilter.eDcr.indMin << "\n";
+ P.inOut->logMain << "emptyDrops_CR filtering: total number of cells: nCB=" << nCB <<" is smaller than emptyCellMinIndex="<< pSolo.cellFilter.eDcr.indMin
+ << ", which is the starting index for the *true empty* cells. The additional non-empty cells will not be detected.\n";
return;
};
