fix getfasta tests
@@ -139,24 +139,61 @@ $BT getfasta -fi t.fa -bed blocks.bed > obs
check obs exp
rm obs exp
-echo -e " getfasta.t12...\c"
+echo -e " getfasta.t12a...\c"
+echo ">three_blocks_match::chr1:0-40
+agggggggggcgggggggggtgggggggggaggggggggg
+>three_blocks_match::chr1:0-40
+agggggggggcgggggggggtgggggggggaggggggggg" > exp
+$BT getfasta -fi t.fa -bed blocks.bed -name > obs
+check obs exp
+rm obs exp
+
+echo -e " getfasta.t12a...\c"
+echo ">three_blocks_match::chr1:0-40
+agggggggggcgggggggggtgggggggggaggggggggg
+>three_blocks_match::chr1:0-40
+agggggggggcgggggggggtgggggggggaggggggggg" > exp
+$BT getfasta -fi t.fa -bed blocks.bed -name+ > obs
+check obs exp
+rm obs exp
+
+echo -e " getfasta.t12b...\c"
echo ">three_blocks_match
agggggggggcgggggggggtgggggggggaggggggggg
>three_blocks_match
agggggggggcgggggggggtgggggggggaggggggggg" > exp
-$BT getfasta -fi t.fa -bed blocks.bed -name > obs
+$BT getfasta -fi t.fa -bed blocks.bed -nameOnly > obs
check obs exp
rm obs exp
-echo -e " getfasta.t13...\c"
+echo -e " getfasta.t13a...\c"
+echo ">three_blocks_match::chr1:0-40(+)
+agggggggggcgggggggggtgggggggggaggggggggg
+>three_blocks_match::chr1:0-40(-)
+ccccccccctcccccccccacccccccccgccccccccct" > exp
+$BT getfasta -fi t.fa -bed blocks.bed -name -s > obs
+check obs exp
+rm obs exp
+
+echo -e " getfasta.t13b...\c"
+echo ">three_blocks_match::chr1:0-40(+)
+agggggggggcgggggggggtgggggggggaggggggggg
+>three_blocks_match::chr1:0-40(-)
+ccccccccctcccccccccacccccccccgccccccccct" > exp
+$BT getfasta -fi t.fa -bed blocks.bed -name+ -s > obs
+check obs exp
+rm obs exp
+
+echo -e " getfasta.t13c...\c"
echo ">three_blocks_match(+)
agggggggggcgggggggggtgggggggggaggggggggg
>three_blocks_match(-)
ccccccccctcccccccccacccccccccgccccccccct" > exp
-$BT getfasta -fi t.fa -bed blocks.bed -name -s > obs
+$BT getfasta -fi t.fa -bed blocks.bed -nameOnly -s > obs
check obs exp
rm obs exp
+
echo -e " getfasta.t14...\c"
echo ">three_blocks_match::chr1:0-40
agggggggggcgggggggggtgggggggggaggggggggg
