merge -s should only affect how things are merged, not reported
@@ -84,12 +84,6 @@ bool RecordOutputMgr::printKeyAndTerminate(RecordKeyVector &keyList) {
//bed3 format, which is surprisingly difficult to do. Had to use the following:
const Bed3Interval *bed3 = static_cast<const Bed3Interval *>(keyList.getKey());
bed3->Bed3Interval::print(_outBuf);
-
- //in addition, if we're doing stranded merges, we need to print the strand sign.
- if (_context->getDesiredStrand() != FileRecordMergeMgr::ANY_STRAND) {
- _outBuf.append("\t");
- _outBuf.append(keyList.getKey()->getStrand());
- }
return false;
}
printBamType bamCode = printBamRecord(keyList);
