Last commit where the chimeric detection new (mult) much the old chimeric detection.
@@ -105,7 +105,7 @@ bool ReadAlign::chimericDetectionMult() {
if (chimScore > chimScoreBest && chimScore >= P.pCh.scoreMin && chimScore+P.pCh.scoreDropMax >= (int) (readLength[0]+readLength[1]) )
{
- chimAligns.clear();
+// chimAligns.clear();
chimAligns.push_back(ChimericAlign(seg1, seg2, chimScore));
if (overlap1==0)
{
