Minor text fixes in parametersDefault.
@@ -547,7 +547,7 @@ alignInsertionFlush None
None ... insertions are not flushed
Right ... insertions are flushed to the right
-### Paired-End reads: presently unsupported/undocumented
+### Paired-End reads
peOverlapNbasesMin 0
int>=0: minimum number of overlap bases to trigger mates merging and realignment
