message: correct mistake with registered alignment skip coverage exclusion
diff: @@ -2084,7 +2084,7 @@ void AlleleParser::removeRegisteredAlignmentsOverlappingPosition(long unsigned i
  set<Allele*> allelesToErase;
  while (f != registeredAlignments.end()) {
  for (deque<RegisteredAlignment>::iterator d = f->second.begin(); d != f->second.end(); ++d) {
  - if (d->start >= pos && d->end > pos) {
  + if (d->start <= pos && d->end > pos) {
  alignmentsToErase[f->first].insert(d);
  for (vector<Allele>::iterator a = d->alleles.begin(); a != d->alleles.end(); ++a) {
  allelesToErase.insert(&*a);
  