message: Uncommenting perceiveBondsSimple()
diff: @@ -163,7 +163,7 @@ bool PdbFormat::read(std::istream& in, Core::Molecule& mol)
  }
  } // End while loop
  mol.perceiveBondsFromResidueData();
  - // mol.perceiveBondsSimple();
  + mol.perceiveBondsSimple();
  return true;
  } // End read
  