message: repr preset tweaks- higher opacity since not double-side by default anymore- add snfg3d symbols for auto all-atom preset
diff: @@ -75,7 +75,8 @@ const auto = StructureRepresentationPresetProvider({
  case Structure.Size.Medium:
  return polymerAndLigand.apply(ref, params, plugin);
  case Structure.Size.Small:
  - return atomicDetail.apply(ref, params, plugin);
  + // `showCarbohydrateSymbol: true` is nice e.g. for PDB 1aga
  + return atomicDetail.apply(ref, { ...params, showCarbohydrateSymbol: true }, plugin);
  }
  }
  });
  @@ -115,9 +116,9 @@ const polymerAndLigand = StructureRepresentationPresetProvider({
  polymer: builder.buildRepresentation(update, components.polymer, { type: 'cartoon', typeParams, color }, { tag: 'polymer' }),
  ligand: builder.buildRepresentation(update, components.ligand, { type: 'ball-and-stick', typeParams, color }, { tag: 'ligand' }),
  nonStandard: builder.buildRepresentation(update, components.nonStandard, { type: 'ball-and-stick', typeParams, color: color || 'polymer-id' }, { tag: 'non-standard' }),
  - branchedBallAndStick: builder.buildRepresentation(update, components.branched, { type: 'ball-and-stick', typeParams: { ...typeParams, alpha: 0.15 }, color }, { tag: 'branched-ball-and-stick' }),
  + branchedBallAndStick: builder.buildRepresentation(update, components.branched, { type: 'ball-and-stick', typeParams: { ...typeParams, alpha: 0.3 }, color }, { tag: 'branched-ball-and-stick' }),
  branchedSnfg3d: builder.buildRepresentation(update, components.branched, { type: 'carbohydrate', typeParams, color }, { tag: 'branched-snfg-3d' }),
  - water: builder.buildRepresentation(update, components.water, { type: 'ball-and-stick', typeParams: { ...typeParams, alpha: 0.51 }, color }, { tag: 'water' }),
  + water: builder.buildRepresentation(update, components.water, { type: 'ball-and-stick', typeParams: { ...typeParams, alpha: 0.6 }, color }, { tag: 'water' }),
  coarse: builder.buildRepresentation(update, components.coarse, { type: 'spacefill', typeParams, color: color || 'polymer-id' }, { tag: 'coarse' })
  };
  @@ -226,7 +227,10 @@ const atomicDetail = StructureRepresentationPresetProvider({
  name: 'Atomic Detail', group: BuiltInPresetGroupName,
  description: 'Shows everything in atomic detail with Ball & Stick.'
  },
  - params: () => CommonParams,
  + params: () => ({
  + ...CommonParams,
  + showCarbohydrateSymbol: PD.Boolean(false)
  + }),
  async apply(ref, params, plugin) {
  const structureCell = StateObjectRef.resolveAndCheck(plugin.state.data, ref);
  if (!structureCell) return {};
  @@ -237,8 +241,13 @@ const atomicDetail = StructureRepresentationPresetProvider({
  const { update, builder, typeParams, color } = reprBuilder(plugin, params);
  const representations = {
  - all: builder.buildRepresentation(update, components.all, { type: 'ball-and-stick', typeParams, color }, { tag: 'all' })
  + all: builder.buildRepresentation(update, components.all, { type: 'ball-and-stick', typeParams, color }, { tag: 'all' }),
  };
  + if (params.showCarbohydrateSymbol) {
  + Object.assign(representations, {
  + snfg3d: builder.buildRepresentation(update, components.all, { type: 'carbohydrate', typeParams: { ...typeParams, alpha: 0.4, visuals: ['carbohydrate-symbol'] }, color }, { tag: 'snfg-3d' }),
  + });
  + }
  await update.commit({ revertOnError: true });
  return { components, representations };
  