These lines get *generated* by certbot. Having them in the file before running certbot results in an apache2 error, and putting them in afterwards is not necessary, since certbot places them there on its own.
@@ -162,9 +162,6 @@ AllowEncodedSlashes NoDecode
ProxyPass /_matrix/ http://127.0.0.1:6167/_matrix/ nocanon
ProxyPassReverse /_matrix/ http://127.0.0.1:6167/_matrix/
-Include /etc/letsencrypt/options-ssl-apache.conf
-SSLCertificateFile /etc/letsencrypt/live/your.server.name/fullchain.pem # EDIT THIS
-SSLCertificateKeyFile /etc/letsencrypt/live/your.server.name/privkey.pem # EDIT THIS
</VirtualHost>
```
