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2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
2b4cbc04_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000474706
|
35/1438042990217.27_20150728002310-00307-ip-10-236-191-2_431024283_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
CPT1B-001
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
CPT1B-005
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
CPT1B-004
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
CPT1B-201
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
CPT1B-202
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name]
|
CPT1B-008
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
CPT1B-020
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
CPT1B-014
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
CPT1B-007
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
CPT1B-013
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
CPT1B-010
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
CPT1B-009
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
51892a80_t__CPT1B_013__ENST00000475238___Name
|
[Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
CPT1B-011
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6b4b997c_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-001 [Transcript ID] ENSMUST00000044858 [bp] 2623 [Protein] 524aa [Translation ID] ENSMUSP00000036585 [CCDS] CCDS57066 [UniProt] Q3TWJ1 [RefSeq] NM_001205214 NM_011306 NP_001192143 NP_035436 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-003 [Transcript ID] ENSMUST00000116612 [bp] 2283 [Protein] 410aa [Translation ID] ENSMUSP00000112311 [CCDS] CCDS57068 [UniProt] P28704 [RefSeq] NM_001205216 NP_001192145 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-002 [Transcript ID] ENSMUST00000173354 [bp] 1743 [Protein] 414aa [Translation ID] ENSMUSP00000133661 [CCDS] CCDS57067 [UniProt] Q8VCR0 [RefSeq] NM_001205215 NP_001192144 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-010 [Transcript ID] ENSMUST00000174299 [bp] 1547 [Protein] 459aa [Translation ID] ENSMUSP00000133775 [CCDS] - [UniProt] G3UXP8 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-004 [Transcript ID] ENSMUST00000173554 [bp] 845 [Protein] 151aa [Translation ID] ENSMUSP00000134299 [CCDS] - [UniProt] G3UZ09 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-008 [Transcript ID] ENSMUST00000174033 [bp] 826 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-009 [Transcript ID] ENSMUST00000174578 [bp] 759 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-006 [Transcript ID] ENSMUST00000174740 [bp] 697 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-007 [Transcript ID] ENSMUST00000174645 [bp] 635 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
6534eadf_ene__Rxrb__ENSMUSG00000039656___Biotype
|
[Name] Rxrb-005 [Transcript ID] ENSMUST00000174130 [bp] 516 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Rxrb (ENSMUSG00000039656)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000039656;r=17:34031812-34038393
|
35/1438042990217.27_20150728002310-00044-ip-10-236-191-2_415992301_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
95a75ba1_t__PDPK1_009__ENST00000460496___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-009 (ENST00000460496)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000460496
|
35/1438042990217.27_20150728002310-00273-ip-10-236-191-2_432536021_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-001 [Transcript ID] ENST00000258104 [bp] 6796 [Protein] 2080aa [Translation ID] ENSP00000258104 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1918 [UniProt] O75923 [RefSeq] NM_001130976 NM_003494 NP_001124448 NP_003485 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-011 [Transcript ID] ENST00000409582 [bp] 6790 [Protein] 2118aa [Translation ID] ENSP00000386547 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46324 [UniProt] O75923 [RefSeq] NM_001130977 NM_001130981 NP_001124449 NP_001124453 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-021 [Transcript ID] ENST00000413539 [bp] 6769 [Protein] 2111aa [Translation ID] ENSP00000407046 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46323 [UniProt] O75923 [RefSeq] NM_001130979 NP_001124451 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-020 [Transcript ID] ENST00000429174 [bp] 6739 [Protein] 2101aa [Translation ID] ENSP00000398305 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46326 [UniProt] O75923 [RefSeq] NM_001130978 NP_001124450 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-004 [Transcript ID] ENST00000409762 [bp] 6727 [Protein] 2097aa [Translation ID] ENSP00000387137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46325 [UniProt] O75923 [RefSeq] NM_001130980 NP_001124452 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-007 [Transcript ID] ENST00000410020 [bp] 6657 [Protein] 2119aa [Translation ID] ENSP00000386881 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46328 [UniProt] O75923 [RefSeq] NM_001130987 NP_001124459 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-002 [Transcript ID] ENST00000409651 [bp] 6636 [Protein] 2112aa [Translation ID] ENSP00000386683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46327 [UniProt] O75923 [RefSeq] NM_001130982 NP_001124454 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-006 [Transcript ID] ENST00000409366 [bp] 6606 [Protein] 2102aa [Translation ID] ENSP00000386512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46330 [UniProt] O75923 [RefSeq] NM_001130983 NP_001124455 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-009 [Transcript ID] ENST00000410041 [bp] 6594 [Protein] 2098aa [Translation ID] ENSP00000386617 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46329 [UniProt] O75923 [RefSeq] NM_001130985 NP_001124457 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-005 [Transcript ID] ENST00000409744 [bp] 6564 [Protein] 2088aa [Translation ID] ENSP00000386285 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46332 [UniProt] O75923 [RefSeq] NM_001130984 NM_001130986 NP_001124456 NP_001124458 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-003 [Transcript ID] ENST00000394120 [bp] 6543 [Protein] 2081aa [Translation ID] ENSP00000377678 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46331 [UniProt] O75923 [RefSeq] NM_001130455 NP_001123927 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-016 [Transcript ID] ENST00000479049 [bp] 3399 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-014 [Transcript ID] ENST00000468173 [bp] 778 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-019 [Transcript ID] ENST00000475076 [bp] 669 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-012 [Transcript ID] ENST00000472873 [bp] 600 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-013 [Transcript ID] ENST00000487180 [bp] 595 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-017 [Transcript ID] ENST00000493767 [bp] 564 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-015 [Transcript ID] ENST00000494501 [bp] 538 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
e0995635_pt__DYSF_020__ENST00000429174___Flags
|
[Name] DYSF-018 [Transcript ID] ENST00000461565 [bp] 515 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-020 (ENST00000429174)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71453722-71686648;t=ENST00000429174
|
35/1438042989443.69_20150728002309-00089-ip-10-236-191-2_427079253_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-001 [Transcript ID] ENST00000310581 [bp] 4018 [Protein] 1132aa [Translation ID] ENSP00000309572 [CCDS] CCDS3861 [UniProt] O14746 [RefSeq] NM_198253 NP_937983 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-005 [Transcript ID] ENST00000334602 [bp] 3210 [Protein] 1069aa [Translation ID] ENSP00000334346 [CCDS] CCDS54831 [UniProt] O14746 [RefSeq] NM_001193376 NP_001180305 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-006 [Transcript ID] ENST00000508104 [bp] 2486 [Protein] 807aa [Translation ID] ENSP00000426042 [CCDS] - [UniProt] O14746 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-004 [Transcript ID] ENST00000460137 [bp] 2992 [Protein] 795aa [Translation ID] ENSP00000425003 [CCDS] - [UniProt] O14746 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-008 [Transcript ID] ENST00000522877 [bp] 408 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-003 [Transcript ID] ENST00000484238 [bp] 2422 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4d3f1a54_pt__TERT_007__ENST00000503656___Biotype
|
[Name] TERT-007 [Transcript ID] ENST00000503656 [bp] 406 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: TERT-007 (ENST00000503656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000164362;r=5:1264363-1266639;t=ENST00000503656
|
35/1438042990217.27_20150728002310-00014-ip-10-236-191-2_424940705_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
|
K7ELW0
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
K7EN27
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
|
Q99497 V9HWC2
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
4493b84f_t__PARK7_002__ENST00000338639___UniProt
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
|
-
|
[
[
"Q",
"9",
"9",
"4",
"9",
"7",
" ",
"V",
"9",
"H",
"W",
"C",
"2"
],
[
"K",
"7",
"E",
"L",
"W",
"0"
],
[
"K",
"7",
"E",
"N",
"2",
"7"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PARK7-002 (ENST00000338639)
|
UniProt
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
35/1438042990217.27_20150728002310-00255-ip-10-236-191-2_434519474_0.json
|
cf117186_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
35/1438042990217.27_20150728002310-00259-ip-10-236-191-2_433231775_0.json
|
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