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unpredictable_ensembl-org

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22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-001 [Transcript ID] ENST00000301071 [bp] 1915 [Protein] 451aa [Translation ID] ENSP00000301071 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8781 [UniProt] Q71U36 [RefSeq] NM_006009 NP_006000 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-002 [Transcript ID] ENST00000295766 [bp] 1887 [Protein] 451aa [Translation ID] ENSP00000439020 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58227 [UniProt] Q71U36 [RefSeq] NM_001270399 NP_001257328 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-006 [Transcript ID] ENST00000550767 [bp] 1384 [Protein] 416aa [Translation ID] ENSP00000446637 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58226 [UniProt] Q71U36 [RefSeq] NM_001270400 NP_001257329 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-011 [Transcript ID] ENST00000546918 [bp] 984 [Protein] 231aa [Translation ID] ENSP00000446613 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8W0F6 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-009 [Transcript ID] ENST00000547939 [bp] 946 [Protein] 219aa [Translation ID] ENSP00000450268 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VQQ4 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-010 [Transcript ID] ENST00000550811 [bp] 650 [Protein] 26aa [Translation ID] ENSP00000449016 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VXZ7 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-008 [Transcript ID] ENST00000552924 [bp] 628 [Protein] 112aa [Translation ID] ENSP00000448725 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VRZ4 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-014 [Transcript ID] ENST00000550254 [bp] 696 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
22851547___TUBA1A_001__ENST00000301071___Flags
[Name] TUBA1A-015 [Transcript ID] ENST00000548363 [bp] 673 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-001 (ENST00000301071)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49184796-49189324;t=ENST00000301071
8/1438042986022.41_20150728002306-00212-ip-10-236-191-2_431060609_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
5a5b711e_t__PDPK1_001__ENST00000342085___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-001 (ENST00000342085)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000342085
8/1438042988511.77_20150728002308-00125-ip-10-236-191-2_429957429_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
952c0e3b__Gene__PARK7__ENSG00000116288___Flags
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PARK7 (ENSG00000116288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116288;r=1:8021723-8031108;t=ENST00000460192
8/1438042988511.77_20150728002308-00024-ip-10-236-191-2_428680420_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
7ba8fbd2_pt__SNCA_006__ENST00000506244___Flags
[Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-006 (ENST00000506244)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647035-90756831;t=ENST00000506244
8/1438042986022.41_20150728002306-00259-ip-10-236-191-2_428272947_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-001 [Transcript ID] ENST00000230538 [bp] 6547 [Protein] 1823aa [Translation ID] ENSP00000230538 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43491 [UniProt] A0A0A0MQS9 [RefSeq] NM_001105206 NP_001098676 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-008 [Transcript ID] ENST00000522006 [bp] 6438 [Protein] 1816aa [Translation ID] ENSP00000429488 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] NM_001105207 NM_002290 NP_001098677 NP_002281 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-009 [Transcript ID] ENST00000389463 [bp] 6297 [Protein] 1816aa [Translation ID] ENSP00000374114 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-012 [Transcript ID] ENST00000424408 [bp] 5983 [Protein] 1816aa [Translation ID] ENSP00000416470 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-005 [Transcript ID] ENST00000368638 [bp] 1061 [Protein] 120aa [Translation ID] ENSP00000357627 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43492 [UniProt] Q16363 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-010 [Transcript ID] ENST00000453937 [bp] 645 [Protein] 120aa [Translation ID] ENSP00000398226 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43492 [UniProt] Q16363 [RefSeq] NM_001105208 NM_001105209 NP_001098678 NP_001098679 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-011 [Transcript ID] ENST00000521398 [bp] 1330 [Protein] 331aa [Translation ID] ENSP00000430336 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RFQ2 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-002 [Transcript ID] ENST00000431543 [bp] 1080 [Protein] 129aa [Translation ID] ENSP00000412136 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q6LET9 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-007 [Transcript ID] ENST00000521732 [bp] 729 [Protein] 187aa [Translation ID] ENSP00000427865 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAQ5 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-003 [Transcript ID] ENST00000368640 [bp] 672 [Protein] 178aa [Translation ID] ENSP00000357629 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y351 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-015 [Transcript ID] ENST00000519932 [bp] 588 [Protein] 107aa [Translation ID] ENSP00000428583 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RHF3 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-006 [Transcript ID] ENST00000455073 [bp] 554 [Protein] 120aa [Translation ID] ENSP00000408604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q16363 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-016 [Transcript ID] ENST00000243219 [bp] 541 [Protein] 88aa [Translation ID] ENSP00000243219 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RFD7 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-014 [Transcript ID] ENST00000521690 [bp] 539 [Protein] 81aa [Translation ID] ENSP00000430415 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RK79 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-019 [Transcript ID] ENST00000523765 [bp] 1054 [Protein] 188aa [Translation ID] ENSP00000427837 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YAP9 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-017 [Transcript ID] ENST00000524032 [bp] 559 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-004 [Transcript ID] ENST00000423735 [bp] 331 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-013 [Transcript ID] ENST00000521187 [bp] 2725 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-022 [Transcript ID] ENST00000604740 [bp] 694 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-020 [Transcript ID] ENST00000519245 [bp] 587 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-021 [Transcript ID] ENST00000521693 [bp] 579 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
0e436e6f__Gene__LAMA4__ENSG00000112769___Flags
[Name] LAMA4-018 [Transcript ID] ENST00000518842 [bp] 480 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939
8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-001 [Transcript ID] ENST00000372040 [bp] 1980 [Protein] 347aa [Translation ID] ENSP00000361110 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6960 [UniProt] J7Q0Z1 Q8N5D6 [RefSeq] NM_001288572 NM_021996 NP_001275501 NP_068836 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-002 [Transcript ID] ENST00000372043 [bp] 1935 [Protein] 294aa [Translation ID] ENSP00000361113 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS65176 [UniProt] Q8N5D6 [RefSeq] NM_001282629 NP_001269558 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-201 [Transcript ID] ENST00000540636 [bp] 1934 [Protein] 330aa [Translation ID] ENSP00000437663 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS65175 [UniProt] Q8N5D6 [RefSeq] NM_001282632 NM_001288573 NP_001269561 NP_001275502 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-006 [Transcript ID] ENST00000372036 [bp] 871 [Protein] 72aa [Translation ID] ENSP00000361106 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5T7U8 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-005 [Transcript ID] ENST00000372038 [bp] 847 [Protein] 160aa [Translation ID] ENSP00000361108 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5T7V0 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-004 [Transcript ID] ENST00000472281 [bp] 2948 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-003 [Transcript ID] ENST00000470431 [bp] 2870 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
f1122c57__Gene__GBGT1__ENSG00000148288___Flags
[Name] GBGT1-007 [Transcript ID] ENST00000487864 [bp] 630 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: GBGT1 (ENSG00000148288)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000148288;r=9:133152948-133163945
8/1438042986022.41_20150728002306-00135-ip-10-236-191-2_433132583_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-201 [Transcript ID] ENST00000340624 [bp] 1311 [Protein] 344aa [Translation ID] ENSP00000345675 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73961 [UniProt] I3L145 [RefSeq] NM_001289113 NP_001276042 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-001 [Transcript ID] ENST00000380450 [bp] 1271 [Protein] 402aa [Translation ID] ENSP00000369816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11117 [UniProt] P04278 [RefSeq] NM_001040 NM_001289116 NP_001031 NP_001276045 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-009 [Transcript ID] ENST00000575903 [bp] 1196 [Protein] 384aa [Translation ID] ENSP00000458973 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58513 [UniProt] P04278 [RefSeq] NM_001146279 NP_001139751 [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-014 [Transcript ID] ENST00000575314 [bp] 1146 [Protein] 344aa [Translation ID] ENSP00000458559 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73961 [UniProt] I3L145 [RefSeq] NM_001289114 NP_001276043 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-002 [Transcript ID] ENST00000416273 [bp] 1042 [Protein] 293aa [Translation ID] ENSP00000388867 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54082 [UniProt] P04278 [RefSeq] NM_001146280 NP_001139752 [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-202 [Transcript ID] ENST00000441599 [bp] 973 [Protein] 287aa [Translation ID] ENSP00000393426 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54083 [UniProt] P04278 [RefSeq] NM_001146281 NP_001139753 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-012 [Transcript ID] ENST00000574539 [bp] 938 [Protein] 235aa [Translation ID] ENSP00000458181 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73962 [UniProt] B4DYU0 [RefSeq] NM_001289115 NP_001276044 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-016 [Transcript ID] ENST00000572262 [bp] 984 [Protein] 290aa [Translation ID] ENSP00000459999 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L2X4 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-015 [Transcript ID] ENST00000570547 [bp] 801 [Protein] 229aa [Translation ID] ENSP00000458875 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1J1 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-005 [Transcript ID] ENST00000576830 [bp] 785 [Protein] 260aa [Translation ID] ENSP00000460219 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0C4DGN2 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-013 [Transcript ID] ENST00000576728 [bp] 776 [Protein] 181aa [Translation ID] ENSP00000459620 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L2F1 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-006 [Transcript ID] ENST00000571153 [bp] 760 [Protein] 212aa [Translation ID] ENSP00000458858 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH5 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-017 [Transcript ID] ENST00000576478 [bp] 639 [Protein] 175aa [Translation ID] ENSP00000461133 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L4B9 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-008 [Transcript ID] ENST00000576152 [bp] 623 [Protein] 206aa [Translation ID] ENSP00000461743 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH6 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-010 [Transcript ID] ENST00000575729 [bp] 526 [Protein] 93aa [Translation ID] ENSP00000458719 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1C1 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-011 [Transcript ID] ENST00000572182 [bp] 479 [Protein] 82aa [Translation ID] ENSP00000458816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1G4 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
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Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-007 [Transcript ID] ENST00000575618 [bp] 463 [Protein] 113aa [Translation ID] ENSP00000459826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH7 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-003 [Transcript ID] ENST00000570527 [bp] 1382 [Protein] 57aa [Translation ID] ENSP00000461162 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L4D0 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-004 [Transcript ID] ENST00000570353 [bp] 1158 [Protein] 181aa [Translation ID] ENSP00000458199 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L0M1 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-018 [Transcript ID] ENST00000576747 [bp] 522 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json
8dca3392_pt__SHBG_005__ENST00000576830___Flags
[Name] SHBG-019 [Transcript ID] ENST00000624152 [bp] 164 [Protein] No protein [Translation ID] - [Biotype] TEC [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SHBG-005 (ENST00000576830)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000129214;r=17:7517382-7536700;t=ENST00000576830
8/1438042986022.41_20150728002306-00155-ip-10-236-191-2_435298768_0.json