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de67cc05__SLC20A2_011__ENST00000518660___Flags | [Name] SLC20A2-007 [Transcript ID] ENST00000521455 [bp] 411 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: SLC20A2-011 (ENST00000518660) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000168575;r=8:42294993-42320889;t=ENST00000518660 | 10/1438042988065.26_20150728002308-00110-ip-10-236-191-2_423160111_0.json |
de67cc05__SLC20A2_011__ENST00000518660___Flags | [Name] SLC20A2-008 [Transcript ID] ENST00000519463 [bp] 388 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: SLC20A2-011 (ENST00000518660) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000168575;r=8:42294993-42320889;t=ENST00000518660 | 10/1438042988065.26_20150728002308-00110-ip-10-236-191-2_423160111_0.json |
de67cc05__SLC20A2_011__ENST00000518660___Flags | [Name] SLC20A2-012 [Transcript ID] ENST00000522401 [bp] 577 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: SLC20A2-011 (ENST00000518660) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000168575;r=8:42294993-42320889;t=ENST00000518660 | 10/1438042988065.26_20150728002308-00110-ip-10-236-191-2_423160111_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-001 [Transcript ID] ENST00000367362 [bp] 5086 [Protein] 541aa [Translation ID] ENSP00000356331 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1401 [UniProt] O00482 [RefSeq] NM_205860 NP_995582 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-201 [Transcript ID] ENST00000544748 [bp] 4775 [Protein] 469aa [Translation ID] ENSP00000439116 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60383 [UniProt] O00482 [RefSeq] NM_001276464 NP_001263393 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-003 [Transcript ID] ENST00000236914 [bp] 3115 [Protein] 495aa [Translation ID] ENSP00000236914 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1400 [UniProt] F1D8R9 O00482 [RefSeq] NM_003822 NP_003813 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-005 [Transcript ID] ENST00000367357 [bp] 1793 [Protein] 377aa [Translation ID] ENSP00000356326 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y328 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-004 [Transcript ID] ENST00000447034 [bp] 213 [Protein] 71aa [Translation ID] ENSP00000414888 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y7S7 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
b7cc3bc2__Gene__NR5A2__ENSG00000116833___Flags | [Name] NR5A2-002 [Transcript ID] ENST00000474307 [bp] 1713 [Protein] 113aa [Translation ID] ENSP00000436776 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PQH2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR5A2 (ENSG00000116833) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000116833;r=1:200027602-200177424 | 10/1438042988065.26_20150728002308-00262-ip-10-236-191-2_426417762_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
81a0b49f_t__RAD51_008__ENST00000532743___Biotype | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
ae595532__Gene__PARK7__ENSG00000116288___Flags | [Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PARK7 (ENSG00000116288) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?g=ENSG00000116288;r=1:8014351-8045565 | 10/1438042992201.62_20150728002312-00231-ip-10-236-191-2_433176896_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
185e4a7c_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000569721 | 10/1438042992201.62_20150728002312-00116-ip-10-236-191-2_427162122_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | Q9NZG9 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | E9PNT5 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt] | E9PJ30 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | E9PI54 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
e86ab8f5_t__RAD51_008__ENST00000532743___UniProt | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | H0YD61 | [
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] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: RAD51-008 (ENST00000532743) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000532743 | 10/1438042987171.38_20150728002307-00226-ip-10-236-191-2_427229890_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
7ebf2857_t__PARK7_003__ENST00000377493___Flags | [Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-003 (ENST00000377493) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000377493 | 10/1438042992201.62_20150728002312-00101-ip-10-236-191-2_428120796_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000395562 [bp] 2528 [Protein] 666aa [Translation ID] ENSP00000378929 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44389 [UniProt] P28329 [RefSeq] NM_001142933 NP_001136405 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | CHAT-203 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000337653 [bp] 2458 [Protein] 748aa [Translation ID] ENSP00000337103 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7232 [UniProt] P28329 [RefSeq] NM_020549 NP_065574 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Name] | CHAT-001 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000351556 [bp] 2286 [Protein] 630aa [Translation ID] ENSP00000345878 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7233 [UniProt] P28329 [RefSeq] NM_001142929 NM_001142934 NM_020985 NP_001136401 NP_001136406 NP_066265 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | CHAT-201 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000339797 [bp] 2124 [Protein] 630aa [Translation ID] ENSP00000343486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7233 [UniProt] P28329 [RefSeq] NM_020984 NP_066264 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | CHAT-007 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000395559 [bp] 2114 [Protein] 630aa [Translation ID] ENSP00000378926 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7233 [UniProt] P28329 [RefSeq] NM_020986 NP_066266 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | CHAT-202 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000466590 [bp] 2528 [Protein] 112aa [Translation ID] ENSP00000473443 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] R4GN13 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | CHAT-002 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000460699 [bp] 749 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | CHAT-004 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000490270 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | CHAT-003 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
091fa9e3_pt__CHAT_002__ENST00000466590___Name | [Transcript ID] ENST00000481336 [bp] 256 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | CHAT-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHAT-002 (ENST00000466590) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000070748;r=10:49614037-49665104;t=ENST00000466590 | 10/1438042992201.62_20150728002312-00309-ip-10-236-191-2_421131767_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
7615c6c1__SYNGAP1_002__ENST00000479510___Biotype | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-002 (ENST00000479510) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33388087-33420172;t=ENST00000479510 | 10/1438042987171.38_20150728002307-00190-ip-10-236-191-2_423685647_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-007 [Transcript ID] ENST00000360617 [bp] 1664 [Protein] 238aa [Translation ID] ENSP00000353829 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33083 [UniProt] P07288 [RefSeq] NM_001030047 NP_001025218 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-003 [Transcript ID] ENST00000326003 [bp] 1463 [Protein] 261aa [Translation ID] ENSP00000314151 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12807 [UniProt] P07288 Q546G3 [RefSeq] NM_001648 NP_001639 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-015 [Transcript ID] ENST00000595952 [bp] 969 [Protein] 218aa [Translation ID] ENSP00000471155 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46155 [UniProt] P07288 [RefSeq] NM_001030048 NP_001025219 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-201 [Transcript ID] ENST00000617027 [bp] 1341 [Protein] 220aa [Translation ID] ENSP00000483513 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8NCW4 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-010 [Transcript ID] ENST00000593997 [bp] 1035 [Protein] 227aa [Translation ID] ENSP00000472907 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P07288 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-014 [Transcript ID] ENST00000598145 [bp] 865 [Protein] 262aa [Translation ID] ENSP00000471827 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] M0R1F0 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-016 [Transcript ID] ENST00000597483 [bp] 810 [Protein] 195aa [Translation ID] ENSP00000472411 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] M0R294 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-012 [Transcript ID] ENST00000601503 [bp] 559 [Protein] 173aa [Translation ID] ENSP00000472213 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] M0R1Z7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-013 [Transcript ID] ENST00000597286 [bp] 552 [Protein] 172aa [Translation ID] ENSP00000470523 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] M0QZF9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-002 [Transcript ID] ENST00000422986 [bp] 1393 [Protein] 90aa [Translation ID] ENSP00000393628 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0B4J1X3 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-006 [Transcript ID] ENST00000596185 [bp] 1130 [Protein] 104aa [Translation ID] ENSP00000471648 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q8WTQ8 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-001 [Transcript ID] ENST00000595392 [bp] 834 [Protein] 124aa [Translation ID] ENSP00000468912 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] M0QX57 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-005 [Transcript ID] ENST00000601349 [bp] 2702 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-004 [Transcript ID] ENST00000596333 [bp] 1599 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-008 [Transcript ID] ENST00000601812 [bp] 1221 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
bdcc394b___Gene__KLK3__ENSG00000142515___Flags | [Name] KLK3-011 [Transcript ID] ENST00000595151 [bp] 571 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KLK3 (ENSG00000142515) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000142515;r=19:50854915-50860764 | 10/1438042988065.26_20150728002308-00122-ip-10-236-191-2_419621308_0.json |
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