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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-004 [Transcript ID] ENST00000396189 [bp] 605 [Protein] 46aa [Translation ID] ENSP00000379492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8W905 [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [RefSeq] | - | [
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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-010 [Transcript ID] ENST00000479980 [bp] 787 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [RefSeq] | - | [
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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-011 [Transcript ID] ENST00000464881 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [RefSeq] | - | [
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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-005 [Transcript ID] ENST00000495221 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [RefSeq] | - | [
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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-008 [Transcript ID] ENST00000482681 [bp] 539 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq] | - | [
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37a5578c_t__PDE1C_007__ENST00000396182___RefSeq | [Name] PDE1C-009 [Transcript ID] ENST00000478736 [bp] 495 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [RefSeq] | - | [
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a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-001 [Transcript ID] ENSMUST00000003550 [bp] 2901 [Protein] 708aa [Translation ID] ENSMUSP00000003550 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS15507 [UniProt] P57716 [RefSeq] NM_021607 NP_067620 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-002 [Transcript ID] ENSMUST00000140643 [bp] 3016 [Protein] 62aa [Translation ID] ENSMUSP00000119128 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RCJ2 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-003 [Transcript ID] ENSMUST00000146137 [bp] 2777 [Protein] 62aa [Translation ID] ENSMUSP00000120663 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RCJ2 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-006 [Transcript ID] ENSMUST00000135928 [bp] 831 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-005 [Transcript ID] ENSMUST00000122986 [bp] 794 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
a1d43b26_ne__Ncstn__ENSMUSG00000003458___Flags | [Name] Ncstn-004 [Transcript ID] ENSMUST00000142825 [bp] 772 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Supporting evidence - Gene: Ncstn (ENSMUSG00000003458) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Evidence?db=core;g=ENSMUSG00000003458;r=1:172066013-172082795 | 41/1438042986451.45_20150728002306-00076-ip-10-236-191-2_420545527_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-001 [Transcript ID] ENSMUST00000032399 [bp] 4678 [Protein] 188aa [Translation ID] ENSMUSP00000032399 [CCDS] CCDS20693 [UniProt] P32883 Q5J7N1 [RefSeq] NM_021284 NP_067259 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-002 [Transcript ID] ENSMUST00000111710 [bp] 1194 [Protein] 189aa [Translation ID] ENSMUSP00000107339 [CCDS] - [UniProt] P32883 Q0VDV7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-003 [Transcript ID] ENSMUST00000155145 [bp] 381 [Protein] 34aa [Translation ID] ENSMUSP00000118251 [CCDS] - [UniProt] B2KGV5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-006 [Transcript ID] ENSMUST00000156486 [bp] 832 [Protein] 40aa [Translation ID] ENSMUSP00000119414 [CCDS] - [UniProt] E9Q8V2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-005 [Transcript ID] ENSMUST00000123972 [bp] 816 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
051f422e__Kras_001__ENSMUST00000032399___Biotype | [Name] Kras-004 [Transcript ID] ENSMUST00000149314 [bp] 599 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Kras-001 (ENSMUST00000032399) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000032399 | 41/1438042989510.73_20150728002309-00173-ip-10-236-191-2_434604909_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-001 [Transcript ID] ENST00000335542 [bp] 1425 [Protein] 117aa [Translation ID] ENSP00000335074 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33700 [UniProt] Q9UBU3 [RefSeq] NM_001302821 NM_016362 NP_001289750 NP_057446 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-008 [Transcript ID] ENST00000287656 [bp] 1313 [Protein] 116aa [Translation ID] ENSP00000287656 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46750 [UniProt] Q9UBU3 [RefSeq] NM_001134941 NP_001128413 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-006 [Transcript ID] ENST00000430179 [bp] 856 [Protein] 116aa [Translation ID] ENSP00000399922 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46750 [UniProt] Q9UBU3 [RefSeq] NM_001302823 NP_001289752 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-009 [Transcript ID] ENST00000457360 [bp] 855 [Protein] 117aa [Translation ID] ENSP00000391406 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33700 [UniProt] Q9UBU3 [RefSeq] NM_001302822 NP_001289751 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-005 [Transcript ID] ENST00000429122 [bp] 793 [Protein] 117aa [Translation ID] ENSP00000414819 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33700 [UniProt] Q9UBU3 [RefSeq] NM_001302824 NM_001302825 NP_001289753 NP_001289754 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-004 [Transcript ID] ENST00000437422 [bp] 443 [Protein] 105aa [Translation ID] ENSP00000416768 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46748 [UniProt] Q9UBU3 [RefSeq] NM_001134944 NP_001128416 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-003 [Transcript ID] ENST00000449238 [bp] 440 [Protein] 104aa [Translation ID] ENSP00000388145 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46749 [UniProt] Q9UBU3 [RefSeq] NM_001134945 NP_001128417 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-018 [Transcript ID] ENST00000439975 [bp] 326 [Protein] 66aa [Translation ID] ENSP00000403725 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46747 [UniProt] Q9UBU3 [RefSeq] NM_001134946 NP_001128418 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-002 [Transcript ID] ENST00000422159 [bp] 401 [Protein] 91aa [Translation ID] ENSP00000405464 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9UBU3 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-014 [Transcript ID] ENST00000425479 [bp] 227 [Protein] 33aa [Translation ID] ENSP00000405031 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ESW0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-017 [Transcript ID] ENST00000446937 [bp] 217 [Protein] 40aa [Translation ID] ENSP00000394923 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A8DN24 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-013 [Transcript ID] ENST00000476283 [bp] 728 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-016 [Transcript ID] ENST00000491589 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-012 [Transcript ID] ENST00000475759 [bp] 536 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
d5ddc8bf_pt__GHRL_004__ENST00000437422___Flags | [Name] GHRL-015 [Transcript ID] ENST00000481287 [bp] 656 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GHRL-004 (ENST00000437422) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157017;r=3:10285754-10292917;t=ENST00000437422 | 41/1438042986451.45_20150728002306-00116-ip-10-236-191-2_408497540_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
69ba5521_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000492021 | 41/1438042986451.45_20150728002306-00003-ip-10-236-191-2_420091461_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-005 [Transcript ID] ENST00000513407 [bp] 2276 [Protein] 164aa [Translation ID] ENSP00000475512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] NM_001285986 NP_001272915 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-002 [Transcript ID] ENST00000471529 [bp] 1723 [Protein] 164aa [Translation ID] ENSP00000425083 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-202 [Transcript ID] ENST00000620031 [bp] 1578 [Protein] 190aa [Translation ID] ENSP00000484778 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] NM_001173531 NM_001285987 NM_203289 NP_001167002 NP_001272916 NP_976034 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-001 [Transcript ID] ENST00000259915 [bp] 1420 [Protein] 360aa [Translation ID] ENSP00000259915 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34391 [UniProt] D2IYK3 Q01860 [RefSeq] NM_002701 NP_002692 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-007 [Transcript ID] ENST00000606567 [bp] 1236 [Protein] 190aa [Translation ID] ENSP00000475880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-006 [Transcript ID] ENST00000512818 [bp] 1233 [Protein] 164aa [Translation ID] ENSP00000425479 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-004 [Transcript ID] ENST00000441888 [bp] 1055 [Protein] 164aa [Translation ID] ENSP00000389359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-201 [Transcript ID] ENST00000619340 [bp] 1084 [Protein] 186aa [Translation ID] ENSP00000481679 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYB7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
3996a065___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-003 [Transcript ID] ENST00000461401 [bp] 791 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 41/1438042989510.73_20150728002309-00334-ip-10-236-191-2_429352973_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-001 [Transcript ID] ENST00000375581 [bp] 3109 [Protein] 466aa [Translation ID] ENSP00000364731 [CCDS] CCDS9528 [UniProt] P08709 [RefSeq] NM_000131 NP_000122 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-201 [Transcript ID] ENST00000541084 [bp] 2873 [Protein] 382aa [Translation ID] ENSP00000442051 [CCDS] CCDS73602 [UniProt] F5H8B0 [RefSeq] NM_001267554 NP_001254483 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-002 [Transcript ID] ENST00000346342 [bp] 2409 [Protein] 444aa [Translation ID] ENSP00000329546 [CCDS] CCDS9529 [UniProt] P08709 [RefSeq] NM_019616 NP_062562 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-004 [Transcript ID] ENST00000444337 [bp] 564 [Protein] 74aa [Translation ID] ENSP00000387669 [CCDS] - [UniProt] E9PH36 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-005 [Transcript ID] ENST00000473085 [bp] 558 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
b457a96c_ript__F7_001__ENST00000375581___Biotype | [Name] F7-003 [Transcript ID] ENST00000479674 [bp] 767 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: F7-001 (ENST00000375581) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000057593;r=13:113105807-113120681;t=ENST00000375581 | 41/1438042986451.45_20150728002306-00084-ip-10-236-191-2_413489102_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-001 [Transcript ID] ENST00000393562 [bp] 2631 [Protein] 545aa [Translation ID] ENSP00000377192 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14756 [RefSeq] NM_000402 NP_000393 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [UniProt] | P11413 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-201 [Transcript ID] ENST00000621232 [bp] 2631 [Protein] 515aa [Translation ID] ENSP00000483686 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44023 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | P11413 | [
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[
"-"
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-006 [Transcript ID] ENST00000393564 [bp] 1661 [Protein] 515aa [Translation ID] ENSP00000377194 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44023 [RefSeq] NM_001042351 NP_001035810 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | P11413 | [
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],
[
"-"
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-010 [Transcript ID] ENST00000369620 [bp] 1799 [Protein] 561aa [Translation ID] ENSP00000358633 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | P11413 | [
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],
[
"-"
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-002 [Transcript ID] ENST00000439227 [bp] 1074 [Protein] 339aa [Translation ID] ENSP00000395599 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt] | E7EUI8 | [
[
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"1",
"1",
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"3"
],
[
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"7",
"E",
"U",
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"8"
],
[
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"E",
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"E",
"9",
"P",
"D",
"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-007 [Transcript ID] ENST00000440967 [bp] 1056 [Protein] 320aa [Translation ID] ENSP00000400648 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt] | E7EM57 | [
[
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"9",
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"D",
"9",
"2"
],
[
"-"
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-005 [Transcript ID] ENST00000433845 [bp] 817 [Protein] 256aa [Translation ID] ENSP00000394690 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | E9PD92 | [
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"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-004 [Transcript ID] ENST00000497281 [bp] 532 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
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"I",
"8"
],
[
"E",
"7",
"E",
"M",
"5",
"7"
],
[
"E",
"9",
"P",
"D",
"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-009 [Transcript ID] ENST00000490651 [bp] 783 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
[
"P",
"1",
"1",
"4",
"1",
"3"
],
[
"E",
"7",
"E",
"U",
"I",
"8"
],
[
"E",
"7",
"E",
"M",
"5",
"7"
],
[
"E",
"9",
"P",
"D",
"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-008 [Transcript ID] ENST00000489497 [bp] 512 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
[
"P",
"1",
"1",
"4",
"1",
"3"
],
[
"E",
"7",
"E",
"U",
"I",
"8"
],
[
"E",
"7",
"E",
"M",
"5",
"7"
],
[
"E",
"9",
"P",
"D",
"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
7124bcf0_pt__G6PD_004__ENST00000497281___UniProt | [Name] G6PD-003 [Transcript ID] ENST00000488434 [bp] 432 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
[
"P",
"1",
"1",
"4",
"1",
"3"
],
[
"E",
"7",
"E",
"U",
"I",
"8"
],
[
"E",
"7",
"E",
"M",
"5",
"7"
],
[
"E",
"9",
"P",
"D",
"9",
"2"
],
[
"-"
]
] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: G6PD-004 (ENST00000497281) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160211;r=X:154535075-154546109;t=ENST00000497281 | 41/1438042989510.73_20150728002309-00143-ip-10-236-191-2_423457659_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-001 [Transcript ID] ENST00000295900 [bp] 7224 [Protein] 892aa [Translation ID] ENSP00000295900 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43102 [UniProt] O15265 [RefSeq] NM_000333 NP_000324 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-201 [Transcript ID] ENST00000538065 [bp] 6842 [Protein] 945aa [Translation ID] ENSP00000439585 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54603 [UniProt] O15265 [RefSeq] NM_001177387 NP_001170858 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-004 [Transcript ID] ENST00000487717 [bp] 3683 [Protein] 892aa [Translation ID] ENSP00000420234 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43102 [UniProt] O15265 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-006 [Transcript ID] ENST00000484332 [bp] 2741 [Protein] 747aa [Translation ID] ENSP00000428277 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46861 [UniProt] O15265 [RefSeq] NM_001128149 NP_001121621 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-002 [Transcript ID] ENST00000474513 [bp] 728 [Protein] 26aa [Translation ID] ENSP00000418203 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A6YYU1 Q9UPD8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-013 [Transcript ID] ENST00000522345 [bp] 346 [Protein] 115aa [Translation ID] ENSP00000428067 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAT6 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-011 [Transcript ID] ENST00000488239 [bp] 585 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-003 [Transcript ID] ENST00000474112 [bp] 3367 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-005 [Transcript ID] ENST00000475897 [bp] 918 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-007 [Transcript ID] ENST00000466529 [bp] 758 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-008 [Transcript ID] ENST00000477516 [bp] 723 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-010 [Transcript ID] ENST00000484668 [bp] 573 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
4624f952_t__ATXN7_006__ENST00000484332___Flags | [Name] ATXN7-009 [Transcript ID] ENST00000472569 [bp] 536 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATXN7-006 (ENST00000484332) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000163635;r=3:63967744-63999796;t=ENST00000484332 | 41/1438042986451.45_20150728002306-00313-ip-10-236-191-2_409195898_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-006 [Transcript ID] ENST00000478722 [bp] 4297 [Protein] 769aa [Translation ID] ENSP00000417901 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9777 [UniProt] Q9NQX3 [RefSeq] NM_020806 NP_065857 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-003 [Transcript ID] ENST00000315266 [bp] 4193 [Protein] 736aa [Translation ID] ENSP00000312771 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS32103 [UniProt] Q9NQX3 [RefSeq] NM_001024218 NP_001019389 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-007 [Transcript ID] ENST00000543237 [bp] 2459 [Protein] 782aa [Translation ID] ENSP00000438404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H039 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-004 [Transcript ID] ENST00000459628 [bp] 1723 [Protein] 380aa [Translation ID] ENSP00000452220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V582 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-014 [Transcript ID] ENST00000555456 [bp] 841 [Protein] 280aa [Translation ID] ENSP00000450706 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YJ30 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-017 [Transcript ID] ENST00000555503 [bp] 655 [Protein] 201aa [Translation ID] ENSP00000452009 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YJR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-019 [Transcript ID] ENST00000556240 [bp] 404 [Protein] 60aa [Translation ID] ENSP00000450442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YIY4 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-010 [Transcript ID] ENST00000553936 [bp] 574 [Protein] 39aa [Translation ID] ENSP00000451725 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] G3V4D2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-011 [Transcript ID] ENST00000555668 [bp] 550 [Protein] 49aa [Translation ID] ENSP00000451935 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] G3V4R0 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-013 [Transcript ID] ENST00000556633 [bp] 512 [Protein] 50aa [Translation ID] ENSP00000451056 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] G3V355 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
d666aada___Gene__GPHN__ENSG00000171723___Flags | [Name] GPHN-012 [Transcript ID] ENST00000557654 [bp] 503 [Protein] 49aa [Translation ID] ENSP00000451790 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] G3V4R0 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: GPHN (ENSG00000171723) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000171723;r=14:66507407-67181803 | 41/1438042989510.73_20150728002309-00096-ip-10-236-191-2_419055077_0.json |
Subsets and Splits