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37008db3_Fkbp5_201__ENSMUST00000177939___Flags | [Name] Fkbp5-001 [Transcript ID] ENSMUST00000079413 [bp] 3542 [Protein] 456aa [Translation ID] ENSMUSP00000078382 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS37528 [UniProt] Q4FJN2 Q64378 [RefSeq] NM_010220 NP_034350 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Fkbp5-201 (ENSMUST00000177939) | Flags | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000024222;r=17:28399095-28517524;t=ENSMUST00000177939 | 13/1438042989891.18_20150728002309-00018-ip-10-236-191-2_427028663_0.json |
37008db3_Fkbp5_201__ENSMUST00000177939___Flags | [Name] Fkbp5-002 [Transcript ID] ENSMUST00000153744 [bp] 777 [Protein] 191aa [Translation ID] ENSMUSP00000116466 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B8JJC2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Fkbp5-201 (ENSMUST00000177939) | Flags | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000024222;r=17:28399095-28517524;t=ENSMUST00000177939 | 13/1438042989891.18_20150728002309-00018-ip-10-236-191-2_427028663_0.json |
37008db3_Fkbp5_201__ENSMUST00000177939___Flags | [Name] Fkbp5-003 [Transcript ID] ENSMUST00000143685 [bp] 836 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Fkbp5-201 (ENSMUST00000177939) | Flags | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000024222;r=17:28399095-28517524;t=ENSMUST00000177939 | 13/1438042989891.18_20150728002309-00018-ip-10-236-191-2_427028663_0.json |
37008db3_Fkbp5_201__ENSMUST00000177939___Flags | [Name] Fkbp5-005 [Transcript ID] ENSMUST00000147716 [bp] 2247 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Fkbp5-201 (ENSMUST00000177939) | Flags | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000024222;r=17:28399095-28517524;t=ENSMUST00000177939 | 13/1438042989891.18_20150728002309-00018-ip-10-236-191-2_427028663_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-204 [Transcript ID] ENST00000613048 [bp] 4369 [Protein] 732aa [Translation ID] ENSP00000484154 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73210 [UniProt] D2CGD1 [RefSeq] NM_023029 NP_075418 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-001 [Transcript ID] ENST00000358487 [bp] 4255 [Protein] 821aa [Translation ID] ENSP00000351276 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31298 [UniProt] P21802 [RefSeq] NM_000141 NP_000132 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-203 [Transcript ID] ENST00000369061 [bp] 3803 [Protein] 709aa [Translation ID] ENSP00000358057 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44486 [UniProt] P21802 [RefSeq] NM_001144914 NP_001138386 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-202 [Transcript ID] ENST00000357555 [bp] 3690 [Protein] 707aa [Translation ID] ENSP00000350166 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53584 [UniProt] P21802 [RefSeq] NM_001144915 NP_001138387 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-012 [Transcript ID] ENST00000356226 [bp] 3547 [Protein] 704aa [Translation ID] ENSP00000348559 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44485 [UniProt] P21802 [RefSeq] NM_001144916 NM_001144918 NP_001138388 NP_001138390 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-005 [Transcript ID] ENST00000369060 [bp] 3244 [Protein] 705aa [Translation ID] ENSP00000358056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44487 [UniProt] P21802 [RefSeq] NM_001144917 NP_001138389 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-010 [Transcript ID] ENST00000457416 [bp] 3061 [Protein] 822aa [Translation ID] ENSP00000410294 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7620 [UniProt] P21802 [RefSeq] NM_022970 NP_075259 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-004 [Transcript ID] ENST00000360144 [bp] 3001 [Protein] 680aa [Translation ID] ENSP00000353262 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44488 [UniProt] P21802 [RefSeq] NM_001144919 NP_001138391 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-006 [Transcript ID] ENST00000369056 [bp] 2650 [Protein] 769aa [Translation ID] ENSP00000358052 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44489 [UniProt] P21802 [RefSeq] NM_001144913 NP_001138385 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-008 [Transcript ID] ENST00000478859 [bp] 3990 [Protein] 593aa [Translation ID] ENSP00000474011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] S4R381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-007 [Transcript ID] ENST00000369059 [bp] 3003 [Protein] 707aa [Translation ID] ENSP00000358055 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EVR7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-011 [Transcript ID] ENST00000369058 [bp] 2727 [Protein] 768aa [Translation ID] ENSP00000358054 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P21802 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-003 [Transcript ID] ENST00000336553 [bp] 2593 [Protein] 669aa [Translation ID] ENSP00000337665 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7BXU9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-201 [Transcript ID] ENST00000351936 [bp] 2478 [Protein] 821aa [Translation ID] ENSP00000309878 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A0MR25 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-009 [Transcript ID] ENST00000346997 [bp] 2472 [Protein] 819aa [Translation ID] ENSP00000263451 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P21802 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-016 [Transcript ID] ENST00000359354 [bp] 1680 [Protein] 254aa [Translation ID] ENSP00000352309 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P21802 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-021 [Transcript ID] ENST00000429361 [bp] 1138 [Protein] 371aa [Translation ID] ENSP00000404219 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C265 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-025 [Transcript ID] ENST00000613324 [bp] 579 [Protein] 136aa [Translation ID] ENSP00000481464 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WY21 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-026 [Transcript ID] ENST00000611527 [bp] 435 [Protein] 64aa [Translation ID] ENSP00000484892 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X2D1 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-024 [Transcript ID] ENST00000604236 [bp] 3501 [Protein] 251aa [Translation ID] ENSP00000474109 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] S4R3B2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-015 [Transcript ID] ENST00000490349 [bp] 1478 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-013 [Transcript ID] ENST00000491111 [bp] 574 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-020 [Transcript ID] ENST00000467584 [bp] 497 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-023 [Transcript ID] ENST00000463870 [bp] 386 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
5de46a4e_t__FGFR2_008__ENST00000478859___Flags | [Name] FGFR2-022 [Transcript ID] ENST00000491475 [bp] 730 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR2-008 (ENST00000478859) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000066468;r=10:121478364-121531314;t=ENST00000478859 | 10/1438042988065.26_20150728002308-00024-ip-10-236-191-2_417635812_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-001 [Transcript ID] ENST00000320574 [bp] 7840 [Protein] 2286aa [Translation ID] ENSP00000322570 [CCDS] CCDS9278 [UniProt] Q07864 [RefSeq] NM_006231 NP_006222 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-004 [Transcript ID] ENST00000535270 [bp] 6800 [Protein] 2259aa [Translation ID] ENSP00000445753 [CCDS] - [UniProt] F5H1D6 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-002 [Transcript ID] ENST00000537064 [bp] 8011 [Protein] 310aa [Translation ID] ENSP00000442578 [CCDS] - [UniProt] F5H7E4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-025 [Transcript ID] ENST00000544870 [bp] 659 [Protein] 150aa [Translation ID] ENSP00000479927 [CCDS] - [UniProt] A0A087WW42 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-015 [Transcript ID] ENST00000441786 [bp] 556 [Protein] 154aa [Translation ID] ENSP00000480727 [CCDS] - [UniProt] A0A087WX51 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-016 [Transcript ID] ENST00000503265 [bp] 1501 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-027 [Transcript ID] ENST00000434528 [bp] 808 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-026 [Transcript ID] ENST00000538196 [bp] 551 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-012 [Transcript ID] ENST00000539215 [bp] 483 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-014 [Transcript ID] ENST00000536445 [bp] 2334 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-003 [Transcript ID] ENST00000544692 [bp] 2221 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-007 [Transcript ID] ENST00000541627 [bp] 2105 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-020 [Transcript ID] ENST00000541213 [bp] 1675 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-024 [Transcript ID] ENST00000534922 [bp] 1660 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-010 [Transcript ID] ENST00000535934 [bp] 1561 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-017 [Transcript ID] ENST00000540987 [bp] 587 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-022 [Transcript ID] ENST00000544414 [bp] 575 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-021 [Transcript ID] ENST00000416953 [bp] 542 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-019 [Transcript ID] ENST00000542362 [bp] 508 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-013 [Transcript ID] ENST00000545015 [bp] 366 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-009 [Transcript ID] ENST00000539357 [bp] 364 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
79220c20_pt__POLE_020__ENST00000541213___Biotype | [Name] POLE-008 [Transcript ID] ENST00000539618 [bp] 299 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: POLE-020 (ENST00000541213) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177084;r=12:132632448-132639169;t=ENST00000541213 | 10/1438042988065.26_20150728002308-00317-ip-10-236-191-2_435606433_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
3842f1f6_pt__SNCA_002__ENST00000394991___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-002 (ENST00000394991) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000394991 | 10/1438042988065.26_20150728002308-00138-ip-10-236-191-2_421401624_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-004 [Transcript ID] ENST00000408937 [bp] 6443 [Protein] 740aa [Translation ID] ENSP00000386200 [CCDS] CCDS43635 [UniProt] O15409 X5D2H2 [RefSeq] NM_148898 NP_683696 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-202 [Transcript ID] ENST00000403559 [bp] 6415 [Protein] 732aa [Translation ID] ENSP00000385069 [CCDS] CCDS55154 [UniProt] O15409 [RefSeq] NM_148900 NP_683698 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-014 [Transcript ID] ENST00000393494 [bp] 2664 [Protein] 715aa [Translation ID] ENSP00000377132 [CCDS] CCDS5760 [UniProt] O15409 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-001 [Transcript ID] ENST00000350908 [bp] 2638 [Protein] 715aa [Translation ID] ENSP00000265436 [CCDS] CCDS5760 [UniProt] O15409 [RefSeq] NM_001172766 NM_014491 NP_001166237 NP_055306 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-017 [Transcript ID] ENST00000360232 [bp] 1412 [Protein] 432aa [Translation ID] ENSP00000353367 [CCDS] CCDS5761 [UniProt] O15409 [RefSeq] NM_148899 NP_683697 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-201 [Transcript ID] ENST00000393491 [bp] 6085 [Protein] 530aa [Translation ID] ENSP00000377130 [CCDS] - [UniProt] Q0PRL4 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-005 [Transcript ID] ENST00000393498 [bp] 2617 [Protein] 694aa [Translation ID] ENSP00000377135 [CCDS] - [UniProt] A8MUV4 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-020 [Transcript ID] ENST00000393489 [bp] 2285 [Protein] 623aa [Translation ID] ENSP00000377129 [CCDS] - [UniProt] A0A024R752 O15409 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-010 [Transcript ID] ENST00000378237 [bp] 2187 [Protein] 365aa [Translation ID] ENSP00000367482 [CCDS] - [UniProt] O15409 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-016 [Transcript ID] ENST00000390668 [bp] 1472 [Protein] 456aa [Translation ID] ENSP00000375084 [CCDS] - [UniProt] Q8N6B5 [RefSeq] NM_001172767 NP_001166238 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-007 [Transcript ID] ENST00000462331 [bp] 1388 [Protein] 67aa [Translation ID] ENSP00000418100 [CCDS] - [UniProt] Q75MZ5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-018 [Transcript ID] ENST00000393495 [bp] 772 [Protein] 171aa [Translation ID] ENSP00000377133 [CCDS] - [UniProt] A8MTU2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-015 [Transcript ID] ENST00000452963 [bp] 625 [Protein] 205aa [Translation ID] ENSP00000409826 [CCDS] - [UniProt] C9JQP8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-008 [Transcript ID] ENST00000441290 [bp] 8301 [Protein] 87aa [Translation ID] ENSP00000416825 [CCDS] - [UniProt] O15409 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-006 [Transcript ID] ENST00000412402 [bp] 3495 [Protein] 87aa [Translation ID] ENSP00000405470 [CCDS] - [UniProt] O15409 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-002 [Transcript ID] ENST00000440349 [bp] 1509 [Protein] 82aa [Translation ID] ENSP00000395552 [CCDS] - [UniProt] F8WDL6 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-009 [Transcript ID] ENST00000459666 [bp] 927 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
aa90df89_t__FOXP2_202__ENST00000403559___Biotype | [Name] FOXP2-011 [Transcript ID] ENST00000495516 [bp] 350 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2615554-2621342;t=ENST00000403559 | 10/1438042992201.62_20150728002312-00123-ip-10-236-191-2_435189672_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-001 [Transcript ID] ENST00000368196 [bp] 2701 [Protein] 790aa [Translation ID] ENSP00000357179 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30891 [RefSeq] NM_001012331 NP_001012331 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | P04629 X5DR71 | [
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07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-004 [Transcript ID] ENST00000392302 [bp] 2609 [Protein] 760aa [Translation ID] ENSP00000376120 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30890 [RefSeq] NM_001007792 NP_001007793 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | P04629 | [
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07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-007 [Transcript ID] ENST00000524377 [bp] 2432 [Protein] 796aa [Translation ID] ENSP00000431418 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1161 [RefSeq] NM_002529 NP_002520 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [UniProt] | P04629 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-006 [Transcript ID] ENST00000358660 [bp] 2492 [Protein] 793aa [Translation ID] ENSP00000351486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | J3KP20 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-002 [Transcript ID] ENST00000497019 [bp] 2508 [Protein] 388aa [Translation ID] ENSP00000436804 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | E9PQG0 | [
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"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-011 [Transcript ID] ENST00000531606 [bp] 642 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | - | [
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"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-008 [Transcript ID] ENST00000489021 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | - | [
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"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-005 [Transcript ID] ENST00000530298 [bp] 3052 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
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"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-010 [Transcript ID] ENST00000534682 [bp] 844 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | - | [
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"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
07f7c52c_t__NTRK1_004__ENST00000392302___UniProt | [Name] NTRK1-009 [Transcript ID] ENST00000533630 [bp] 645 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | - | [
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[
"-"
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NTRK1-004 (ENST00000392302) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000198400;r=1:156815656-156881794;t=ENST00000392302 | 10/1438042988065.26_20150728002308-00286-ip-10-236-191-2_432669885_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
745f6e0e_t__PDPK1_011__ENST00000471311___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-011 (ENST00000471311) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000471311 | 10/1438042987171.38_20150728002307-00110-ip-10-236-191-2_435452561_0.json |
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