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c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-001 [Transcript ID] ENST00000234420 [bp] 7476 [Protein] 1360aa [Translation ID] ENSP00000234420 [CCDS] CCDS1836 [UniProt] P52701 [RefSeq] NM_000179 NP_000170 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-203 [Transcript ID] ENST00000614496 [bp] 4150 [Protein] 1058aa [Translation ID] ENSP00000477844 [CCDS] CCDS62907 [UniProt] P52701 [RefSeq] NM_001281493 NP_001268422 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-201 [Transcript ID] ENST00000538136 [bp] 4055 [Protein] 1058aa [Translation ID] ENSP00000438580 [CCDS] CCDS62907 [UniProt] P52701 [RefSeq] NM_001281494 NP_001268423 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-202 [Transcript ID] ENST00000540021 [bp] 3930 [Protein] 1230aa [Translation ID] ENSP00000446475 [CCDS] CCDS62906 [UniProt] P52701 [RefSeq] NM_001281492 NP_001268421 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-205 [Transcript ID] ENST00000622629 [bp] 4324 [Protein] 327aa [Translation ID] ENSP00000482078 [CCDS] - [UniProt] A0A087WYT6 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-204 [Transcript ID] ENST00000616033 [bp] 3429 [Protein] 1067aa [Translation ID] ENSP00000480261 [CCDS] - [UniProt] A0A087WWJ1 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-008 [Transcript ID] ENST00000606499 [bp] 833 [Protein] 51aa [Translation ID] ENSP00000475605 [CCDS] - [UniProt] U3KQ72 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-004 [Transcript ID] ENST00000455383 [bp] 578 [Protein] 116aa [Translation ID] ENSP00000397484 [CCDS] - [UniProt] C9J8Y8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-006 [Transcript ID] ENST00000411819 [bp] 548 [Protein] 151aa [Translation ID] ENSP00000406248 [CCDS] - [UniProt] C9J7Y7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-005 [Transcript ID] ENST00000420813 [bp] 491 [Protein] 101aa [Translation ID] ENSP00000390382 [CCDS] - [UniProt] C9JH55 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-002 [Transcript ID] ENST00000445503 [bp] 4158 [Protein] 160aa [Translation ID] ENSP00000405294 [CCDS] - [UniProt] F8WAX8 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-003 [Transcript ID] ENST00000456246 [bp] 846 [Protein] 104aa [Translation ID] ENSP00000410570 [CCDS] - [UniProt] F8W7G9 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-009 [Transcript ID] ENST00000607272 [bp] 2219 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-007 [Transcript ID] ENST00000493177 [bp] 813 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
c0688ff6_pt__MSH6_201__ENST00000538136___Biotype | [Name] MSH6-010 [Transcript ID] ENST00000454137 [bp] 725 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-002 [Transcript ID] ENST00000368666 [bp] 2700 [Protein] 372aa [Translation ID] ENSP00000357655 [CCDS] CCDS5097 [UniProt] O95389 [RefSeq] NM_198239 NP_937882 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-202 [Transcript ID] ENST00000361714 [bp] 2512 [Protein] 354aa [Translation ID] ENSP00000354734 [CCDS] CCDS5098 [UniProt] O95389 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-007 [Transcript ID] ENST00000604763 [bp] 1250 [Protein] 354aa [Translation ID] ENSP00000473777 [CCDS] CCDS5098 [UniProt] O95389 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-201 [Transcript ID] ENST00000230529 [bp] 1235 [Protein] 354aa [Translation ID] ENSP00000230529 [CCDS] CCDS5098 [UniProt] O95389 [RefSeq] NM_003880 NP_003871 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-203 [Transcript ID] ENST00000368663 [bp] 1089 [Protein] 230aa [Translation ID] ENSP00000357652 [CCDS] - [UniProt] O95958 Q8WYK7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-204 [Transcript ID] ENST00000409166 [bp] 953 [Protein] 130aa [Translation ID] ENSP00000386467 [CCDS] - [UniProt] Q3T1A9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-001 [Transcript ID] ENST00000454589 [bp] 1305 [Protein] 219aa [Translation ID] ENSP00000395928 [CCDS] - [UniProt] G3V0J1 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-005 [Transcript ID] ENST00000368664 [bp] 1305 [Protein] 237aa [Translation ID] ENSP00000357653 [CCDS] - [UniProt] F8WC24 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-004 [Transcript ID] ENST00000620524 [bp] 1062 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-006 [Transcript ID] ENST00000613648 [bp] 938 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
05c77d8f__Gene__WISP3__ENSG00000112761___Biotype | [Name] WISP3-003 [Transcript ID] ENST00000483439 [bp] 490 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: WISP3 (ENSG00000112761) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112761;r=6:112375275-112392171;t=ENST00000230529 | 30/1438042986625.58_20150728002306-00055-ip-10-236-191-2_425119209_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-001 [Transcript ID] ENSMUST00000085546 [bp] 2838 [Protein] 215aa [Translation ID] ENSMUSP00000082682 [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] NM_010439 NP_034569 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-003 [Transcript ID] ENSMUST00000110505 [bp] 1720 [Protein] 215aa [Translation ID] ENSMUSP00000106132 [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-002 [Transcript ID] ENSMUST00000093196 [bp] 1092 [Protein] 215aa [Translation ID] ENSMUSP00000106131 [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-006 [Transcript ID] ENSMUST00000139443 [bp] 923 [Protein] 171aa [Translation ID] ENSMUSP00000144129 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-010 [Transcript ID] ENSMUST00000202133 [bp] 685 [Protein] 211aa [Translation ID] ENSMUSP00000144412 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-008 [Transcript ID] ENSMUST00000125605 [bp] 604 [Protein] 92aa [Translation ID] ENSMUSP00000114515 [CCDS] - [UniProt] D3YVC6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-007 [Transcript ID] ENSMUST00000138553 [bp] 428 [Protein] 125aa [Translation ID] ENSMUSP00000118733 [CCDS] - [UniProt] D3YZ18 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-009 [Transcript ID] ENSMUST00000155086 [bp] 902 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-004 [Transcript ID] ENSMUST00000133667 [bp] 654 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
a33de38c_ne__Hmgb1__ENSMUSG00000066551___Biotype | [Name] Hmgb1-005 [Transcript ID] ENSMUST00000123645 [bp] 461 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
e7d1ae8c_t__PDPK1_015__ENST00000566659___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-015 (ENST00000566659) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 18/1438042989142.82_20150728002309-00274-ip-10-236-191-2_419369449_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-001 [Transcript ID] ENSMUST00000085546 [bp] 2838 [Protein] 215aa [Translation ID] ENSMUSP00000082682 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] NM_010439 NP_034569 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-003 [Transcript ID] ENSMUST00000110505 [bp] 1720 [Protein] 215aa [Translation ID] ENSMUSP00000106132 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-002 [Transcript ID] ENSMUST00000093196 [bp] 1092 [Protein] 215aa [Translation ID] ENSMUSP00000106131 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS19883 [UniProt] P63158 Q58EV5 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-006 [Transcript ID] ENSMUST00000139443 [bp] 923 [Protein] 171aa [Translation ID] ENSMUSP00000144129 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-010 [Transcript ID] ENSMUST00000202133 [bp] 685 [Protein] 211aa [Translation ID] ENSMUSP00000144412 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-008 [Transcript ID] ENSMUST00000125605 [bp] 604 [Protein] 92aa [Translation ID] ENSMUSP00000114515 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YVC6 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-007 [Transcript ID] ENSMUST00000138553 [bp] 428 [Protein] 125aa [Translation ID] ENSMUSP00000118733 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YZ18 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-009 [Transcript ID] ENSMUST00000155086 [bp] 902 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-004 [Transcript ID] ENSMUST00000133667 [bp] 654 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
31105887_ne__Hmgb1__ENSMUSG00000066551___Flags | [Name] Hmgb1-005 [Transcript ID] ENSMUST00000123645 [bp] 461 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Hmgb1 (ENSMUSG00000066551) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000066551;r=5:149046702-149184489 | 18/1438042987228.91_20150728002307-00096-ip-10-236-191-2_424145561_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
51f461c5_t__PDPK1_005__ENST00000491073___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-005 (ENST00000491073) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000491073 | 18/1438042988650.6_20150728002308-00190-ip-10-236-191-2_429227577_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-001 [Transcript ID] ENST00000372755 [bp] 6489 [Protein] 1066aa [Translation ID] ENSP00000361841 [CCDS] CCDS7340 [UniProt] A0A024QZN4 P18206 [RefSeq] NM_003373 NP_003364 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-201 [Transcript ID] ENST00000211998 [bp] 5482 [Protein] 1134aa [Translation ID] ENSP00000211998 [CCDS] CCDS7341 [UniProt] P18206 V9HWK2 [RefSeq] NM_014000 NP_054706 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-002 [Transcript ID] ENST00000436396 [bp] 4412 [Protein] 806aa [Translation ID] ENSP00000415489 [CCDS] - [UniProt] Q5JQ13 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-006 [Transcript ID] ENST00000624354 [bp] 3307 [Protein] 57aa [Translation ID] ENSP00000485551 [CCDS] - [UniProt] A0A096LPE1 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-007 [Transcript ID] ENST00000623461 [bp] 7995 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-003 [Transcript ID] ENST00000478896 [bp] 727 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-005 [Transcript ID] ENST00000461383 [bp] 268 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
c88c8401_ipt__VCL_001__ENST00000372755___Biotype | [Name] VCL-004 [Transcript ID] ENST00000472585 [bp] 556 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: VCL-001 (ENST00000372755) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000035403;r=10:73998114-74121363;t=ENST00000372755 | 18/1438042989142.82_20150728002309-00305-ip-10-236-191-2_435963236_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
3d8eb96b_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000569721 | 18/1438042989142.82_20150728002309-00238-ip-10-236-191-2_432248249_0.json |
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