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bbe1c31d___ARPP19_002__ENST00000249822___Flags | [Name] ARPP19-010 [Transcript ID] ENST00000569723 [bp] 550 [Protein] 71aa [Translation ID] ENSP00000455610 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ52 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARPP19-002 (ENST00000249822) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000128989;r=15:52547244-52569164;t=ENST00000249822 | 30/1438042986357.49_20150728002306-00040-ip-10-236-191-2_429220290_0.json |
bbe1c31d___ARPP19_002__ENST00000249822___Flags | [Name] ARPP19-006 [Transcript ID] ENST00000567830 [bp] 275 [Protein] 72aa [Translation ID] ENSP00000457123 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BTD3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARPP19-002 (ENST00000249822) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000128989;r=15:52547244-52569164;t=ENST00000249822 | 30/1438042986357.49_20150728002306-00040-ip-10-236-191-2_429220290_0.json |
bbe1c31d___ARPP19_002__ENST00000249822___Flags | [Name] ARPP19-013 [Transcript ID] ENST00000565288 [bp] 242 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARPP19-002 (ENST00000249822) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000128989;r=15:52547244-52569164;t=ENST00000249822 | 30/1438042986357.49_20150728002306-00040-ip-10-236-191-2_429220290_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-001 [Transcript ID] ENST00000357654 [bp] 7094 [Protein] 1863aa [Translation ID] ENSP00000350283 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11453 [UniProt] P38398 [RefSeq] NM_007294 NP_009225 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-005 [Transcript ID] ENST00000471181 [bp] 5936 [Protein] 1884aa [Translation ID] ENSP00000418960 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11456 [UniProt] P38398 [RefSeq] NM_007300 NP_009231 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-006 [Transcript ID] ENST00000493795 [bp] 5732 [Protein] 1816aa [Translation ID] ENSP00000418775 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11459 [UniProt] - [RefSeq] NM_007297 NP_009228 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-007 [Transcript ID] ENST00000468300 [bp] 3273 [Protein] 699aa [Translation ID] ENSP00000417148 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11455 [UniProt] P38398 [RefSeq] NM_007299 NP_009230 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-014 [Transcript ID] ENST00000491747 [bp] 2379 [Protein] 759aa [Translation ID] ENSP00000420705 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11454 [UniProt] A0A024R1V0 P38398 [RefSeq] NM_007298 NP_009229 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-012 [Transcript ID] ENST00000354071 [bp] 4497 [Protein] 1399aa [Translation ID] ENSP00000326002 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5YLB2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-029 [Transcript ID] ENST00000352993 [bp] 3668 [Protein] 721aa [Translation ID] ENSP00000312236 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024R1Z8 P38398 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-011 [Transcript ID] ENST00000470026 [bp] 2108 [Protein] 649aa [Translation ID] ENSP00000419274 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EWN5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-004 [Transcript ID] ENST00000477152 [bp] 1980 [Protein] 622aa [Translation ID] ENSP00000419988 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PH68 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-009 [Transcript ID] ENST00000478531 [bp] 1972 [Protein] 623aa [Translation ID] ENSP00000420412 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EUM2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-008 [Transcript ID] ENST00000493919 [bp] 1948 [Protein] 572aa [Translation ID] ENSP00000418819 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZA85 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-013 [Transcript ID] ENST00000494123 [bp] 1612 [Protein] 473aa [Translation ID] ENSP00000419103 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q3B891 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-015 [Transcript ID] ENST00000484087 [bp] 1495 [Protein] 498aa [Translation ID] ENSP00000419481 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8B8 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-024 [Transcript ID] ENST00000591534 [bp] 1282 [Protein] 354aa [Translation ID] ENSP00000467329 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EPC7 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-018 [Transcript ID] ENST00000473961 [bp] 958 [Protein] 319aa [Translation ID] ENSP00000420201 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8D8 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-019 [Transcript ID] ENST00000487825 [bp] 800 [Protein] 266aa [Translation ID] ENSP00000418212 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y881 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-023 [Transcript ID] ENST00000586385 [bp] 781 [Protein] 173aa [Translation ID] ENSP00000465818 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C6YB45 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-003 [Transcript ID] ENST00000497488 [bp] 779 [Protein] 177aa [Translation ID] ENSP00000418986 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9IZW4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-017 [Transcript ID] ENST00000476777 [bp] 769 [Protein] 222aa [Translation ID] ENSP00000417554 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EQW4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-022 [Transcript ID] ENST00000461574 [bp] 726 [Protein] 242aa [Translation ID] ENSP00000417241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y850 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-027 [Transcript ID] ENST00000618469 [bp] 718 [Protein] 23aa [Translation ID] ENSP00000478114 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G1UI37 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-025 [Transcript ID] ENST00000591849 [bp] 563 [Protein] 96aa [Translation ID] ENSP00000465347 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EJW3 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-016 [Transcript ID] ENST00000489037 [bp] 455 [Protein] 98aa [Translation ID] ENSP00000420781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ENB7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-026 [Transcript ID] ENST00000412061 [bp] 1312 [Protein] 437aa [Translation ID] ENSP00000397145 [Biotype] Non stop decay [CCDS] - [UniProt] A0A0A0MSN1 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-010 [Transcript ID] ENST00000461221 [bp] 5693 [Protein] 63aa [Translation ID] ENSP00000418548 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P38398 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-002 [Transcript ID] ENST00000492859 [bp] 1584 [Protein] 59aa [Translation ID] ENSP00000420253 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PC22 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-020 [Transcript ID] ENST00000461798 [bp] 582 [Protein] 63aa [Translation ID] ENSP00000417988 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P38398 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-028 [Transcript ID] ENST00000621897 [bp] 375 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
c9baa7ba_t__BRCA1_005__ENST00000471181___Flags | [Name] BRCA1-021 [Transcript ID] ENST00000472490 [bp] 561 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: BRCA1-005 (ENST00000471181) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000012048;r=17:43045629-43125483;t=ENST00000471181 | 30/1438042986357.49_20150728002306-00309-ip-10-236-191-2_432627893_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-001 [Transcript ID] ENST00000583313 [bp] 4961 [Protein] 174aa [Translation ID] ENSP00000463058 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS72872 [UniProt] A0A023T787 Q9Y5S9 [RefSeq] NM_005105 NP_005096 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-006 [Transcript ID] ENST00000632555 [bp] 751 [Protein] 174aa [Translation ID] ENSP00000488265 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS72872 [UniProt] A0A023T787 [RefSeq] - [Flags] | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-002 [Transcript ID] ENST00000369307 [bp] 796 [Protein] 173aa [Translation ID] ENSP00000358313 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9Y5S9 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-008 [Transcript ID] ENST00000632040 [bp] 495 [Protein] 106aa [Translation ID] ENSP00000488887 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] - [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-009 [Transcript ID] ENST00000633781 [bp] 440 [Protein] 106aa [Translation ID] ENSP00000487764 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] - [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-003 [Transcript ID] ENST00000498663 [bp] 764 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
58b3b03d_t__RBM8A_002__ENST00000369307___Flags | [Name] RBM8A-004 [Transcript ID] ENST00000484825 [bp] 542 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RBM8A-002 (ENST00000369307) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000265241;r=1:145925642-145927460;t=ENST00000369307 | 30/1438042986357.49_20150728002306-00273-ip-10-236-191-2_435521286_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-003 [Transcript ID] ENST00000302345 [bp] 3534 [Protein] 401aa [Translation ID] ENSP00000307674 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] NM_001159773 NM_138793 NP_001153245 NP_620148 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-201 [Transcript ID] ENST00000620915 [bp] 3337 [Protein] 401aa [Translation ID] ENSP00000477798 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-001 [Transcript ID] ENST00000392446 [bp] 3252 [Protein] 401aa [Translation ID] ENSP00000376241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-002 [Transcript ID] ENST00000591773 [bp] 1669 [Protein] 401aa [Translation ID] ENSP00000467437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11760 [UniProt] A0A024R8U8 Q8WVQ1 [RefSeq] NM_001159772 NP_001153244 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-016 [Transcript ID] ENST00000588611 [bp] 900 [Protein] 118aa [Translation ID] ENSP00000465816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EKW6 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-008 [Transcript ID] ENST00000588075 [bp] 881 [Protein] 76aa [Translation ID] ENSP00000465769 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EKT2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-021 [Transcript ID] ENST00000586916 [bp] 769 [Protein] 61aa [Translation ID] ENSP00000467970 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EQT4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-020 [Transcript ID] ENST00000590370 [bp] 614 [Protein] 65aa [Translation ID] ENSP00000466637 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMT2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-018 [Transcript ID] ENST00000591625 [bp] 599 [Protein] 15aa [Translation ID] ENSP00000467777 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EQD4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-011 [Transcript ID] ENST00000592033 [bp] 502 [Protein] 38aa [Translation ID] ENSP00000467886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EIP9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-006 [Transcript ID] ENST00000591811 [bp] 466 [Protein] 38aa [Translation ID] ENSP00000464841 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EIP9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-004 [Transcript ID] ENST00000592228 [bp] 1546 [Protein] 264aa [Translation ID] ENSP00000466743 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] K7EN15 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-012 [Transcript ID] ENST00000591732 [bp] 578 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-025 [Transcript ID] ENST00000592887 [bp] 555 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-013 [Transcript ID] ENST00000587242 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
ea2be464_t__CANT1_020__ENST00000590370___Flags | [Name] CANT1-005 [Transcript ID] ENST00000588096 [bp] 369 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CANT1-020 (ENST00000590370) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000171302;r=17:78997427-79009764;t=ENST00000590370 | 30/1438042986625.58_20150728002306-00126-ip-10-236-191-2_429412525_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-203 [Transcript ID] ENST00000448921 [bp] 3532 [Protein] 418aa [Translation ID] ENSP00000416066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002236 NM_001127701 NM_001127703 NM_001127704 NM_001127705 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-202 [Transcript ID] ENST00000437397 [bp] 3340 [Protein] 418aa [Translation ID] ENSP00000408474 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001127702 NM_001127706 NM_001127707 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-201 [Transcript ID] ENST00000355814 [bp] 3236 [Protein] 418aa [Translation ID] ENSP00000348068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002235 NM_001127700 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-001 [Transcript ID] ENST00000440909 [bp] 3144 [Protein] 418aa [Translation ID] ENSP00000390299 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-002 [Transcript ID] ENST00000393088 [bp] 1885 [Protein] 418aa [Translation ID] ENSP00000376803 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-003 [Transcript ID] ENST00000404814 [bp] 1628 [Protein] 418aa [Translation ID] ENSP00000385960 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-004 [Transcript ID] ENST00000393087 [bp] 1622 [Protein] 418aa [Translation ID] ENSP00000376802 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_000295 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-008 [Transcript ID] ENST00000449399 [bp] 1559 [Protein] 418aa [Translation ID] ENSP00000416354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-006 [Transcript ID] ENST00000402629 [bp] 1450 [Protein] 359aa [Translation ID] ENSP00000386094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-007 [Transcript ID] ENST00000557492 [bp] 951 [Protein] 144aa [Translation ID] ENSP00000452452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0B4J278 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-017 [Transcript ID] ENST00000556091 [bp] 643 [Protein] 156aa [Translation ID] ENSP00000452169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V544 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-010 [Transcript ID] ENST00000557118 [bp] 583 [Protein] 22aa [Translation ID] ENSP00000451826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V4I7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-015 [Transcript ID] ENST00000553327 [bp] 581 [Protein] 92aa [Translation ID] ENSP00000452480 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5R8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-011 [Transcript ID] ENST00000556955 [bp] 571 [Protein] 117aa [Translation ID] ENSP00000451098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V387 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-016 [Transcript ID] ENST00000554720 [bp] 446 [Protein] 105aa [Translation ID] ENSP00000450561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2B9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-005 [Transcript ID] ENST00000489769 [bp] 1562 [Protein] 306aa [Translation ID] ENSP00000451525 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-014 [Transcript ID] ENST00000555289 [bp] 609 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-012 [Transcript ID] ENST00000557093 [bp] 568 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
2b2504b4_SERPINA1_202__ENST00000437397___Flags | [Name] SERPINA1-013 [Transcript ID] ENST00000557361 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-202 (ENST00000437397) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94844713-94857030;t=ENST00000437397 | 30/1438042986625.58_20150728002306-00150-ip-10-236-191-2_419836342_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-001 [Transcript ID] ENST00000234420 [bp] 7476 [Protein] 1360aa [Translation ID] ENSP00000234420 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1836 [UniProt] P52701 [RefSeq] NM_000179 NP_000170 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-203 [Transcript ID] ENST00000614496 [bp] 4150 [Protein] 1058aa [Translation ID] ENSP00000477844 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS62907 [UniProt] P52701 [RefSeq] NM_001281493 NP_001268422 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-201 [Transcript ID] ENST00000538136 [bp] 4055 [Protein] 1058aa [Translation ID] ENSP00000438580 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS62907 [UniProt] P52701 [RefSeq] NM_001281494 NP_001268423 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-202 [Transcript ID] ENST00000540021 [bp] 3930 [Protein] 1230aa [Translation ID] ENSP00000446475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS62906 [UniProt] P52701 [RefSeq] NM_001281492 NP_001268421 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-205 [Transcript ID] ENST00000622629 [bp] 4324 [Protein] 327aa [Translation ID] ENSP00000482078 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYT6 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-204 [Transcript ID] ENST00000616033 [bp] 3429 [Protein] 1067aa [Translation ID] ENSP00000480261 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WWJ1 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-008 [Transcript ID] ENST00000606499 [bp] 833 [Protein] 51aa [Translation ID] ENSP00000475605 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] U3KQ72 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-004 [Transcript ID] ENST00000455383 [bp] 578 [Protein] 116aa [Translation ID] ENSP00000397484 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J8Y8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-006 [Transcript ID] ENST00000411819 [bp] 548 [Protein] 151aa [Translation ID] ENSP00000406248 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7Y7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-005 [Transcript ID] ENST00000420813 [bp] 491 [Protein] 101aa [Translation ID] ENSP00000390382 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JH55 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-002 [Transcript ID] ENST00000445503 [bp] 4158 [Protein] 160aa [Translation ID] ENSP00000405294 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WAX8 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-003 [Transcript ID] ENST00000456246 [bp] 846 [Protein] 104aa [Translation ID] ENSP00000410570 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8W7G9 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-009 [Transcript ID] ENST00000607272 [bp] 2219 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-007 [Transcript ID] ENST00000493177 [bp] 813 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
34fc8e14_pt__MSH6_201__ENST00000538136___Flags | [Name] MSH6-010 [Transcript ID] ENST00000454137 [bp] 725 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MSH6-201 (ENST00000538136) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000116062;r=2:47783955-47806945;t=ENST00000538136 | 30/1438042986357.49_20150728002306-00312-ip-10-236-191-2_422730117_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-203 [Transcript ID] ENST00000344290 [bp] 6816 [Protein] 776aa [Translation ID] ENSP00000340820 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] NM_001123066 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-201 [Transcript ID] ENST00000262410 [bp] 6762 [Protein] 758aa [Translation ID] ENSP00000262410 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] NM_016835 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-204 [Transcript ID] ENST00000351559 [bp] 5811 [Protein] 441aa [Translation ID] ENSP00000303214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] NM_005910 NP_005901 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-202 [Transcript ID] ENST00000340799 [bp] 5724 [Protein] 412aa [Translation ID] ENSP00000340438 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] NM_001123067 NP_001116539 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-205 [Transcript ID] ENST00000535772 [bp] 5718 [Protein] 410aa [Translation ID] ENSP00000443028 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] NM_001203251 NM_001203252 NP_001190180 NP_001190181 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-002 [Transcript ID] ENST00000446361 [bp] 5345 [Protein] 383aa [Translation ID] ENSP00000408975 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11500 [UniProt] A0A024R9Y0 P10636 [RefSeq] NM_016834 NP_058518 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-004 [Transcript ID] ENST00000415613 [bp] 2331 [Protein] 776aa [Translation ID] ENSP00000410838 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-008 [Transcript ID] ENST00000571987 [bp] 2277 [Protein] 758aa [Translation ID] ENSP00000458742 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-007 [Transcript ID] ENST00000574436 [bp] 1326 [Protein] 441aa [Translation ID] ENSP00000460965 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-003 [Transcript ID] ENST00000420682 [bp] 1239 [Protein] 412aa [Translation ID] ENSP00000413056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
4c6870f1_pt__MAPT_203__ENST00000344290___Flags | [Name] MAPT-006 [Transcript ID] ENST00000431008 [bp] 1233 [Protein] 410aa [Translation ID] ENSP00000389250 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-203 (ENST00000344290) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:43971942-44096096;t=ENST00000344290 | 30/1438042986625.58_20150728002306-00214-ip-10-236-191-2_439953169_0.json |
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