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ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
ed725ba9_pt__SNCA_008__ENST00000508895___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: SNCA-008 (ENST00000508895) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000145335;r=4:90647409-90757364;t=ENST00000508895 | 28/1438042989301.17_20150728002309-00259-ip-10-236-191-2_420422139_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-002 [Transcript ID] ENST00000379775 [bp] 4483 [Protein] 520aa [Translation ID] ENSP00000369100 [CCDS] CCDS7078 [UniProt] Q16875 [RefSeq] NM_004566 NP_004557 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-201 [Transcript ID] ENST00000536985 [bp] 4271 [Protein] 534aa [Translation ID] ENSP00000443319 [CCDS] CCDS60479 [UniProt] Q16875 [RefSeq] NM_001282630 NP_001269559 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-001 [Transcript ID] ENST00000379789 [bp] 4157 [Protein] 500aa [Translation ID] ENSP00000369115 [CCDS] CCDS44353 [UniProt] Q16875 [RefSeq] NM_001145443 NP_001138915 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-010 [Transcript ID] ENST00000379785 [bp] 2181 [Protein] 526aa [Translation ID] ENSP00000369111 [CCDS] - [UniProt] Q5VX20 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-015 [Transcript ID] ENST00000317350 [bp] 1999 [Protein] 513aa [Translation ID] ENSP00000369105 [CCDS] - [UniProt] Q5W015 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-203 [Transcript ID] ENST00000626882 [bp] 1965 [Protein] 526aa [Translation ID] ENSP00000487277 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-006 [Transcript ID] ENST00000360521 [bp] 1964 [Protein] 514aa [Translation ID] ENSP00000353712 [CCDS] - [UniProt] Q16875 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-202 [Transcript ID] ENST00000625260 [bp] 1752 [Protein] 455aa [Translation ID] ENSP00000486311 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-013 [Transcript ID] ENST00000450232 [bp] 595 [Protein] 143aa [Translation ID] ENSP00000390285 [CCDS] - [UniProt] H0Y483 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-005 [Transcript ID] ENST00000414237 [bp] 513 [Protein] 92aa [Translation ID] ENSP00000416677 [CCDS] - [UniProt] Q9H178 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-011 [Transcript ID] ENST00000441697 [bp] 244 [Protein] 31aa [Translation ID] ENSP00000404995 [CCDS] - [UniProt] Q9BQU1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-008 [Transcript ID] ENST00000467491 [bp] 2131 [Protein] 455aa [Translation ID] ENSP00000434628 [CCDS] - [UniProt] F2Z2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-012 [Transcript ID] ENST00000461744 [bp] 2098 [Protein] 455aa [Translation ID] ENSP00000433771 [CCDS] - [UniProt] F2Z2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-007 [Transcript ID] ENST00000490474 [bp] 2086 [Protein] 455aa [Translation ID] ENSP00000436885 [CCDS] - [UniProt] F2Z2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-009 [Transcript ID] ENST00000477914 [bp] 2063 [Protein] 455aa [Translation ID] ENSP00000432356 [CCDS] - [UniProt] F2Z2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-004 [Transcript ID] ENST00000475881 [bp] 536 [Protein] 61aa [Translation ID] ENSP00000434342 [CCDS] - [UniProt] H0YDV0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
80715bfa_Gene__PFKFB3__ENSG00000170525___Biotype | [Name] PFKFB3-014 [Transcript ID] ENST00000487989 [bp] 661 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PFKFB3 (ENSG00000170525) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000170525;r=10:6144934-6235545 | 28/1438042989301.17_20150728002309-00023-ip-10-236-191-2_417686674_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-002 [Transcript ID] ENST00000327247 [bp] 2387 [Protein] 536aa [Translation ID] ENSP00000314508 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_001005741 NM_001005742 NP_001005741 NP_001005742 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-001 [Transcript ID] ENST00000368373 [bp] 2276 [Protein] 536aa [Translation ID] ENSP00000357357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_000157 NP_000148 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-015 [Transcript ID] ENST00000427500 [bp] 2063 [Protein] 487aa [Translation ID] ENSP00000402577 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53374 [UniProt] P04062 [RefSeq] NM_001171812 NP_001165283 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-016 [Transcript ID] ENST00000428024 [bp] 1817 [Protein] 449aa [Translation ID] ENSP00000397986 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53373 [UniProt] P04062 [RefSeq] NM_001171811 NP_001165282 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-012 [Transcript ID] ENST00000493842 [bp] 1020 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-005 [Transcript ID] ENST00000478472 [bp] 1005 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-010 [Transcript ID] ENST00000491081 [bp] 892 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-013 [Transcript ID] ENST00000473570 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-009 [Transcript ID] ENST00000460156 [bp] 750 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-006 [Transcript ID] ENST00000484489 [bp] 749 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-007 [Transcript ID] ENST00000497670 [bp] 696 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-014 [Transcript ID] ENST00000467918 [bp] 625 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-003 [Transcript ID] ENST00000464536 [bp] 559 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
13f8b80a_ipt__GBA_005__ENST00000478472___Flags | [Name] GBA-011 [Transcript ID] ENST00000470104 [bp] 487 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: GBA-005 (ENST00000478472) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000177628;r=1:155204752-155206250;t=ENST00000478472 | 28/1438042989301.17_20150728002309-00267-ip-10-236-191-2_435935645_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-001 [Transcript ID] ENST00000569430 [bp] 2374 [Protein] 438aa [Translation ID] ENSP00000454229 [CCDS] CCDS10632 [UniProt] A0A024QZB8 Q13286 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-203 [Transcript ID] ENST00000360019 [bp] 1913 [Protein] 438aa [Translation ID] ENSP00000353116 [CCDS] CCDS10632 [UniProt] A0A024QZB8 Q13286 [RefSeq] NM_000086 NM_001042432 NP_000077 NP_001035897 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-006 [Transcript ID] ENST00000333496 [bp] 1580 [Protein] 414aa [Translation ID] ENSP00000329171 [CCDS] CCDS73855 [UniProt] Q13286 [RefSeq] NM_001286104 NP_001273033 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-007 [Transcript ID] ENST00000395653 [bp] 1577 [Protein] 338aa [Translation ID] ENSP00000379014 [CCDS] CCDS73852 [UniProt] B4DMY6 [RefSeq] NM_001286105 NP_001273034 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-012 [Transcript ID] ENST00000357857 [bp] 1519 [Protein] 384aa [Translation ID] ENSP00000350523 [CCDS] CCDS73854 [UniProt] B4DFF3 [RefSeq] NM_001286110 NP_001273039 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-202 [Transcript ID] ENST00000359984 [bp] 1733 [Protein] 336aa [Translation ID] ENSP00000353073 [CCDS] - [UniProt] O95086 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-201 [Transcript ID] ENST00000355477 [bp] 1660 [Protein] 181aa [Translation ID] ENSP00000347660 [CCDS] - [UniProt] Q9UBD8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-205 [Transcript ID] ENST00000631023 [bp] 1586 [Protein] 341aa [Translation ID] ENSP00000486616 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-008 [Transcript ID] ENST00000357806 [bp] 1469 [Protein] 339aa [Translation ID] ENSP00000350457 [CCDS] - [UniProt] Q13286 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-204 [Transcript ID] ENST00000628023 [bp] 1422 [Protein] 82aa [Translation ID] ENSP00000486178 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-005 [Transcript ID] ENST00000567963 [bp] 1325 [Protein] 341aa [Translation ID] ENSP00000455387 [CCDS] - [UniProt] H3BPM8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-020 [Transcript ID] ENST00000565316 [bp] 1266 [Protein] 421aa [Translation ID] ENSP00000456117 [CCDS] - [UniProt] Q13286 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-017 [Transcript ID] ENST00000568443 [bp] 886 [Protein] 175aa [Translation ID] ENSP00000454899 [CCDS] - [UniProt] H3BNK7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-009 [Transcript ID] ENST00000568558 [bp] 735 [Protein] 184aa [Translation ID] ENSP00000455603 [CCDS] - [UniProt] H3BQ48 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-030 [Transcript ID] ENST00000565688 [bp] 650 [Protein] 176aa [Translation ID] ENSP00000456122 [CCDS] - [UniProt] H3BR84 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-031 [Transcript ID] ENST00000561505 [bp] 609 [Protein] 121aa [Translation ID] ENSP00000457615 [CCDS] - [UniProt] H3BUF8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-014 [Transcript ID] ENST00000565778 [bp] 569 [Protein] 167aa [Translation ID] ENSP00000458015 [CCDS] - [UniProt] O95090 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-027 [Transcript ID] ENST00000567804 [bp] 557 [Protein] 74aa [Translation ID] ENSP00000455365 [CCDS] - [UniProt] H3BPL0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-035 [Transcript ID] ENST00000565140 [bp] 1225 [Protein] 181aa [Translation ID] ENSP00000455342 [CCDS] - [UniProt] Q9UBD8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-011 [Transcript ID] ENST00000568422 [bp] 1224 [Protein] 132aa [Translation ID] ENSP00000455549 [CCDS] - [UniProt] H3BQ08 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-019 [Transcript ID] ENST00000569030 [bp] 1109 [Protein] 253aa [Translation ID] ENSP00000454680 [CCDS] - [UniProt] Q13286 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-018 [Transcript ID] ENST00000566057 [bp] 931 [Protein] 105aa [Translation ID] ENSP00000456693 [CCDS] - [UniProt] Q9UBH5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-015 [Transcript ID] ENST00000567495 [bp] 762 [Protein] 181aa [Translation ID] ENSP00000456013 [CCDS] - [UniProt] Q9UBD8 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-010 [Transcript ID] ENST00000568497 [bp] 577 [Protein] 82aa [Translation ID] ENSP00000456414 [CCDS] - [UniProt] H3BRU8 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-034 [Transcript ID] ENST00000564091 [bp] 539 [Protein] 135aa [Translation ID] ENSP00000454466 [CCDS] - [UniProt] H3BMN4 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-026 [Transcript ID] ENST00000567160 [bp] 616 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-029 [Transcript ID] ENST00000565236 [bp] 582 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-024 [Transcript ID] ENST00000566816 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-028 [Transcript ID] ENST00000566472 [bp] 551 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-025 [Transcript ID] ENST00000566040 [bp] 544 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-032 [Transcript ID] ENST00000568472 [bp] 477 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-016 [Transcript ID] ENST00000565047 [bp] 461 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-002 [Transcript ID] ENST00000563874 [bp] 3081 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-021 [Transcript ID] ENST00000568452 [bp] 1445 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-023 [Transcript ID] ENST00000561689 [bp] 1286 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-022 [Transcript ID] ENST00000568076 [bp] 1228 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-013 [Transcript ID] ENST00000566083 [bp] 1182 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-004 [Transcript ID] ENST00000564574 [bp] 1159 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-003 [Transcript ID] ENST00000566824 [bp] 1009 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
fff7dcb6_pt__CLN3_002__ENST00000563874___Biotype | [Name] CLN3-033 [Transcript ID] ENST00000565354 [bp] 759 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CLN3-002 (ENST00000563874) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000188603;r=16:28477280-28494576;t=ENST00000563874 | 28/1438042990112.92_20150728002310-00029-ip-10-236-191-2_424697751_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | PRKACA-001 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-003 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-002 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | PRKACA-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-010 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | PRKACA-008 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-005 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name] | PRKACA-007 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-004 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
b3c04194___PRKACA_010__ENST00000587372___Name | [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-009 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372 | 28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
a4d04844_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000464702 | 28/1438042990112.92_20150728002310-00217-ip-10-236-191-2_430636327_0.json |
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