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d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-005 [Transcript ID] ENST00000451799 [bp] 569 [Protein] 22aa [Translation ID] ENSP00000416316 [CCDS] - [UniProt] F8WCQ9 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-004 [Transcript ID] ENST00000488080 [bp] 1852 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] NR_038133 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-006 [Transcript ID] ENST00000469597 [bp] 584 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-018 [Transcript ID] ENST00000481174 [bp] 482 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-009 [Transcript ID] ENST00000492964 [bp] 742 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-017 [Transcript ID] ENST00000491801 [bp] 734 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-007 [Transcript ID] ENST00000490654 [bp] 568 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
d0e2b1c0_pt__CHN1_001__ENST00000409900___Biotype | [Name] CHN1-016 [Transcript ID] ENST00000485882 [bp] 556 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CHN1-001 (ENST00000409900) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128656;r=2:174799363-175005226;t=ENST00000409900 | 47/1438042986806.32_20150728002306-00066-ip-10-236-191-2_435628751_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-203 [Transcript ID] ENST00000448921 [bp] 3532 [Protein] 418aa [Translation ID] ENSP00000416066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002236 NM_001127701 NM_001127703 NM_001127704 NM_001127705 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-202 [Transcript ID] ENST00000437397 [bp] 3340 [Protein] 418aa [Translation ID] ENSP00000408474 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001127702 NM_001127706 NM_001127707 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-201 [Transcript ID] ENST00000355814 [bp] 3236 [Protein] 418aa [Translation ID] ENSP00000348068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002235 NM_001127700 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-001 [Transcript ID] ENST00000440909 [bp] 3144 [Protein] 418aa [Translation ID] ENSP00000390299 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-002 [Transcript ID] ENST00000393088 [bp] 1885 [Protein] 418aa [Translation ID] ENSP00000376803 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-003 [Transcript ID] ENST00000404814 [bp] 1628 [Protein] 418aa [Translation ID] ENSP00000385960 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-004 [Transcript ID] ENST00000393087 [bp] 1622 [Protein] 418aa [Translation ID] ENSP00000376802 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_000295 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-008 [Transcript ID] ENST00000449399 [bp] 1559 [Protein] 418aa [Translation ID] ENSP00000416354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-006 [Transcript ID] ENST00000402629 [bp] 1450 [Protein] 359aa [Translation ID] ENSP00000386094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-007 [Transcript ID] ENST00000557492 [bp] 951 [Protein] 144aa [Translation ID] ENSP00000452452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0B4J278 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-017 [Transcript ID] ENST00000556091 [bp] 643 [Protein] 156aa [Translation ID] ENSP00000452169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V544 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-010 [Transcript ID] ENST00000557118 [bp] 583 [Protein] 22aa [Translation ID] ENSP00000451826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V4I7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-015 [Transcript ID] ENST00000553327 [bp] 581 [Protein] 92aa [Translation ID] ENSP00000452480 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5R8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-011 [Transcript ID] ENST00000556955 [bp] 571 [Protein] 117aa [Translation ID] ENSP00000451098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V387 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-016 [Transcript ID] ENST00000554720 [bp] 446 [Protein] 105aa [Translation ID] ENSP00000450561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2B9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-005 [Transcript ID] ENST00000489769 [bp] 1562 [Protein] 306aa [Translation ID] ENSP00000451525 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-014 [Transcript ID] ENST00000555289 [bp] 609 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-012 [Transcript ID] ENST00000557093 [bp] 568 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
238cb3d5_SERPINA1_201__ENST00000355814___Flags | [Name] SERPINA1-013 [Transcript ID] ENST00000557361 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-201 (ENST00000355814) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197249;r=14:94849508-94856972;t=ENST00000355814 | 47/1438042986806.32_20150728002306-00107-ip-10-236-191-2_419408310_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-002 [Transcript ID] ENST00000555818 [bp] 7831 [Protein] 1804aa [Translation ID] ENSP00000450832 [CCDS] CCDS9807 [UniProt] O43166 [RefSeq] NM_001284247 NM_015556 NP_001271176 NP_056371 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-001 [Transcript ID] ENST00000358550 [bp] 6539 [Protein] 1782aa [Translation ID] ENSP00000351352 [CCDS] CCDS61491 [UniProt] O43166 [RefSeq] NM_001284246 NP_001271175 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-003 [Transcript ID] ENST00000381232 [bp] 5944 [Protein] 1783aa [Translation ID] ENSP00000370630 [CCDS] CCDS61490 [UniProt] O43166 [RefSeq] NM_001284245 NP_001271174 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-019 [Transcript ID] ENST00000537413 [bp] 4129 [Protein] 1257aa [Translation ID] ENSP00000440682 [CCDS] - [UniProt] F5GYF8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-006 [Transcript ID] ENST00000555066 [bp] 785 [Protein] 262aa [Translation ID] ENSP00000452450 [CCDS] - [UniProt] H0YJY2 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-010 [Transcript ID] ENST00000557151 [bp] 744 [Protein] 32aa [Translation ID] ENSP00000452080 [CCDS] - [UniProt] G3V4Z3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-005 [Transcript ID] ENST00000554874 [bp] 2106 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-017 [Transcript ID] ENST00000557712 [bp] 1823 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-013 [Transcript ID] ENST00000556408 [bp] 903 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-012 [Transcript ID] ENST00000556780 [bp] 591 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-009 [Transcript ID] ENST00000554126 [bp] 576 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-008 [Transcript ID] ENST00000555989 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-014 [Transcript ID] ENST00000554362 [bp] 552 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-015 [Transcript ID] ENST00000553453 [bp] 521 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-011 [Transcript ID] ENST00000557469 [bp] 457 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-016 [Transcript ID] ENST00000555652 [bp] 379 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-004 [Transcript ID] ENST00000554960 [bp] 1136 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
e11a6d8d_ene__SIPA1L1__ENSG00000197555___Biotype | [Name] SIPA1L1-007 [Transcript ID] ENST00000556959 [bp] 574 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SIPA1L1 (ENSG00000197555) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000197555;r=14:71320449-71741229 | 47/1438042986806.32_20150728002306-00116-ip-10-236-191-2_441318584_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-001 [Transcript ID] ENST00000291478 [bp] 10888 [Protein] 1289aa [Translation ID] ENSP00000291478 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3028 [UniProt] O60229 [RefSeq] NM_007064 NP_008995 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-005 [Transcript ID] ENST00000240874 [bp] 6537 [Protein] 1663aa [Translation ID] ENSP00000240874 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3027 [UniProt] O60229 [RefSeq] NM_003947 NP_003938 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-201 [Transcript ID] ENST00000360013 [bp] 10806 [Protein] 2986aa [Translation ID] ENSP00000353109 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QSW6 [RefSeq] NM_001024660 NP_001019831 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-004 [Transcript ID] ENST00000354186 [bp] 10586 [Protein] 2955aa [Translation ID] ENSP00000346122 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7BXZ5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-013 [Transcript ID] ENST00000460856 [bp] 6509 [Protein] 1654aa [Translation ID] ENSP00000418611 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9IZQ6 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-009 [Transcript ID] ENST00000439170 [bp] 810 [Protein] 215aa [Translation ID] ENSP00000402950 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C1X7 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-010 [Transcript ID] ENST00000448253 [bp] 804 [Protein] 268aa [Translation ID] ENSP00000395236 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C0I9 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-003 [Transcript ID] ENST00000454902 [bp] 722 [Protein] 194aa [Translation ID] ENSP00000400064 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J1B4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-007 [Transcript ID] ENST00000483658 [bp] 2620 [Protein] 53aa [Translation ID] ENSP00000487487 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-002 [Transcript ID] ENST00000393496 [bp] 3190 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-006 [Transcript ID] ENST00000477496 [bp] 3068 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-012 [Transcript ID] ENST00000488825 [bp] 1344 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-016 [Transcript ID] ENST00000462213 [bp] 684 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-008 [Transcript ID] ENST00000393501 [bp] 3157 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-014 [Transcript ID] ENST00000459915 [bp] 2080 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-020 [Transcript ID] ENST00000484224 [bp] 940 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-021 [Transcript ID] ENST00000498499 [bp] 894 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-011 [Transcript ID] ENST00000522553 [bp] 858 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-018 [Transcript ID] ENST00000473056 [bp] 587 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-017 [Transcript ID] ENST00000471431 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-019 [Transcript ID] ENST00000494648 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
ca75ec03__Gene__KALRN__ENSG00000160145___Flags | [Name] KALRN-015 [Transcript ID] ENST00000484542 [bp] 487 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: KALRN (ENSG00000160145) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000160145;r=3:124080023-124726325 | 47/1438042986806.32_20150728002306-00154-ip-10-236-191-2_424082012_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-204 [Transcript ID] ENST00000624204 [bp] 3417 [Protein] 756aa [Translation ID] ENSP00000485312 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289408 NP_001276337 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-202 [Transcript ID] ENST00000432292 [bp] 3234 [Protein] 756aa [Translation ID] ENSP00000398378 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289409 NP_001276338 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-001 [Transcript ID] ENST00000441310 [bp] 3225 [Protein] 932aa [Translation ID] ENSP00000406490 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2302 [UniProt] P54277 [RefSeq] NM_000534 NP_000525 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-003 [Transcript ID] ENST00000409823 [bp] 2795 [Protein] 893aa [Translation ID] ENSP00000387125 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46474 [UniProt] P54277 [RefSeq] NM_001128143 NP_001121615 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-010 [Transcript ID] ENST00000447232 [bp] 2576 [Protein] 770aa [Translation ID] ENSP00000401064 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46473 [UniProt] P54277 [RefSeq] NM_001128144 NP_001121616 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-201 [Transcript ID] ENST00000418224 [bp] 3018 [Protein] 667aa [Translation ID] ENSP00000404492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5FBZ9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-006 [Transcript ID] ENST00000424307 [bp] 2153 [Protein] 711aa [Translation ID] ENSP00000389938 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PC65 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-004 [Transcript ID] ENST00000409985 [bp] 1882 [Protein] 181aa [Translation ID] ENSP00000386623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PC40 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-011 [Transcript ID] ENST00000409593 [bp] 1668 [Protein] 555aa [Translation ID] ENSP00000387169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P54277 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-203 [Transcript ID] ENST00000618056 [bp] 1468 [Protein] 248aa [Translation ID] ENSP00000480632 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5FBZ4 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-007 [Transcript ID] ENST00000374826 [bp] 948 [Protein] 165aa [Translation ID] ENSP00000363959 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5XG96 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-016 [Transcript ID] ENST00000452382 [bp] 881 [Protein] 266aa [Translation ID] ENSP00000396232 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PH88 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-014 [Transcript ID] ENST00000424766 [bp] 831 [Protein] 194aa [Translation ID] ENSP00000410082 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JF76 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-013 [Transcript ID] ENST00000446877 [bp] 560 [Protein] 44aa [Translation ID] ENSP00000413837 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JKP0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-015 [Transcript ID] ENST00000420421 [bp] 331 [Protein] 73aa [Translation ID] ENSP00000391136 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J4L1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-005 [Transcript ID] ENST00000342075 [bp] 3012 [Protein] 108aa [Translation ID] ENSP00000343888 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8W8L1 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-002 [Transcript ID] ENST00000450931 [bp] 2817 [Protein] 659aa [Translation ID] ENSP00000406225 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q3BDU3 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-008 [Transcript ID] ENST00000447734 [bp] 570 [Protein] 47aa [Translation ID] ENSP00000411151 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q5FBZ7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-012 [Transcript ID] ENST00000421722 [bp] 2285 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-009 [Transcript ID] ENST00000424059 [bp] 2004 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
7d26cde3_pt__PMS1_003__ENST00000409823___Flags | [Name] PMS1-017 [Transcript ID] ENST00000483293 [bp] 663 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-204 [Transcript ID] ENST00000545985 [bp] 2606 [Protein] 429aa [Translation ID] ENSP00000475241 [CCDS] - [UniProt] U3KPU7 [RefSeq] NM_001164277 NP_001157749 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-202 [Transcript ID] ENST00000357590 [bp] 2356 [Protein] 451aa [Translation ID] ENSP00000476176 [CCDS] - [UniProt] U3KQS2 [RefSeq] NM_001164278 NP_001157750 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-201 [Transcript ID] ENST00000330775 [bp] 2102 [Protein] 429aa [Translation ID] ENSP00000476242 [CCDS] - [UniProt] U3KPU7 [RefSeq] NM_001164280 NM_001467 NP_001157752 NP_001458 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-203 [Transcript ID] ENST00000538950 [bp] 2032 [Protein] 356aa [Translation ID] ENSP00000475991 [CCDS] - [UniProt] U3KQL4 [RefSeq] NM_001164279 NP_001157751 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-009 [Transcript ID] ENST00000525102 [bp] 2844 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-001 [Transcript ID] ENST00000527992 [bp] 2040 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-004 [Transcript ID] ENST00000525039 [bp] 1780 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-012 [Transcript ID] ENST00000530407 [bp] 1472 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-006 [Transcript ID] ENST00000525372 [bp] 1388 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-016 [Transcript ID] ENST00000529510 [bp] 850 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-015 [Transcript ID] ENST00000526626 [bp] 730 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
926bb6f7_ene__SLC37A4__ENSG00000137700___Biotype | [Name] SLC37A4-013 [Transcript ID] ENST00000534384 [bp] 554 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Gene: SLC37A4 (ENSG00000137700) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?g=ENSG00000137700;r=11:118894824-118901616 | 47/1438042986806.32_20150728002306-00217-ip-10-236-191-2_428412917_0.json |
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