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c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-008 [Transcript ID] ENST00000449399 [bp] 1559 [Protein] 418aa [Translation ID] ENSP00000416354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-006 [Transcript ID] ENST00000402629 [bp] 1450 [Protein] 359aa [Translation ID] ENSP00000386094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-007 [Transcript ID] ENST00000557492 [bp] 951 [Protein] 144aa [Translation ID] ENSP00000452452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0B4J278 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-017 [Transcript ID] ENST00000556091 [bp] 643 [Protein] 156aa [Translation ID] ENSP00000452169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V544 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-010 [Transcript ID] ENST00000557118 [bp] 583 [Protein] 22aa [Translation ID] ENSP00000451826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V4I7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-015 [Transcript ID] ENST00000553327 [bp] 581 [Protein] 92aa [Translation ID] ENSP00000452480 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5R8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-011 [Transcript ID] ENST00000556955 [bp] 571 [Protein] 117aa [Translation ID] ENSP00000451098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V387 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-016 [Transcript ID] ENST00000554720 [bp] 446 [Protein] 105aa [Translation ID] ENSP00000450561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2B9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-005 [Transcript ID] ENST00000489769 [bp] 1562 [Protein] 306aa [Translation ID] ENSP00000451525 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-014 [Transcript ID] ENST00000555289 [bp] 609 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-012 [Transcript ID] ENST00000557093 [bp] 568 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
c9cc1afc_SERPINA1_203__ENST00000448921___Flags | [Name] SERPINA1-013 [Transcript ID] ENST00000557361 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: SERPINA1-203 (ENST00000448921) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000197249;r=14:94843084-94857029;t=ENST00000448921 | 47/1438042986806.32_20150728002306-00275-ip-10-236-191-2_433021147_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
f55f87e1_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 47/1438042986806.32_20150728002306-00280-ip-10-236-191-2_427136887_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-001 [Transcript ID] ENST00000258104 [bp] 6796 [Protein] 2080aa [Translation ID] ENSP00000258104 [CCDS] CCDS1918 [UniProt] O75923 [RefSeq] NM_001130976 NM_003494 NP_001124448 NP_003485 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-011 [Transcript ID] ENST00000409582 [bp] 6790 [Protein] 2118aa [Translation ID] ENSP00000386547 [CCDS] CCDS46324 [UniProt] O75923 [RefSeq] NM_001130977 NM_001130981 NP_001124449 NP_001124453 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-021 [Transcript ID] ENST00000413539 [bp] 6769 [Protein] 2111aa [Translation ID] ENSP00000407046 [CCDS] CCDS46323 [UniProt] O75923 [RefSeq] NM_001130979 NP_001124451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-020 [Transcript ID] ENST00000429174 [bp] 6739 [Protein] 2101aa [Translation ID] ENSP00000398305 [CCDS] CCDS46326 [UniProt] O75923 [RefSeq] NM_001130978 NP_001124450 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-004 [Transcript ID] ENST00000409762 [bp] 6727 [Protein] 2097aa [Translation ID] ENSP00000387137 [CCDS] CCDS46325 [UniProt] O75923 [RefSeq] NM_001130980 NP_001124452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-007 [Transcript ID] ENST00000410020 [bp] 6657 [Protein] 2119aa [Translation ID] ENSP00000386881 [CCDS] CCDS46328 [UniProt] O75923 [RefSeq] NM_001130987 NP_001124459 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-002 [Transcript ID] ENST00000409651 [bp] 6636 [Protein] 2112aa [Translation ID] ENSP00000386683 [CCDS] CCDS46327 [UniProt] O75923 [RefSeq] NM_001130982 NP_001124454 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-006 [Transcript ID] ENST00000409366 [bp] 6606 [Protein] 2102aa [Translation ID] ENSP00000386512 [CCDS] CCDS46330 [UniProt] O75923 [RefSeq] NM_001130983 NP_001124455 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-009 [Transcript ID] ENST00000410041 [bp] 6594 [Protein] 2098aa [Translation ID] ENSP00000386617 [CCDS] CCDS46329 [UniProt] O75923 [RefSeq] NM_001130985 NP_001124457 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-005 [Transcript ID] ENST00000409744 [bp] 6564 [Protein] 2088aa [Translation ID] ENSP00000386285 [CCDS] CCDS46332 [UniProt] O75923 [RefSeq] NM_001130984 NM_001130986 NP_001124456 NP_001124458 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-003 [Transcript ID] ENST00000394120 [bp] 6543 [Protein] 2081aa [Translation ID] ENSP00000377678 [CCDS] CCDS46331 [UniProt] O75923 [RefSeq] NM_001130455 NP_001123927 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-016 [Transcript ID] ENST00000479049 [bp] 3399 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-014 [Transcript ID] ENST00000468173 [bp] 778 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-019 [Transcript ID] ENST00000475076 [bp] 669 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-012 [Transcript ID] ENST00000472873 [bp] 600 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-013 [Transcript ID] ENST00000487180 [bp] 595 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-017 [Transcript ID] ENST00000493767 [bp] 564 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-015 [Transcript ID] ENST00000494501 [bp] 538 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
9dbb3592_pt__DYSF_007__ENST00000410020___Biotype | [Name] DYSF-018 [Transcript ID] ENST00000461565 [bp] 515 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: DYSF-007 (ENST00000410020) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000135636;r=2:71466702-71686648;t=ENST00000410020 | 47/1438042986806.32_20150728002306-00259-ip-10-236-191-2_424461211_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
6c515c53_t__PDPK1_011__ENST00000471311___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-011 (ENST00000471311) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000471311 | 47/1438042987034.19_20150728002307-00254-ip-10-236-191-2_430010192_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-204 [Transcript ID] ENST00000624204 [bp] 3417 [Protein] 756aa [Translation ID] ENSP00000485312 [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289408 NP_001276337 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-202 [Transcript ID] ENST00000432292 [bp] 3234 [Protein] 756aa [Translation ID] ENSP00000398378 [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289409 NP_001276338 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-001 [Transcript ID] ENST00000441310 [bp] 3225 [Protein] 932aa [Translation ID] ENSP00000406490 [CCDS] CCDS2302 [UniProt] P54277 [RefSeq] NM_000534 NP_000525 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-003 [Transcript ID] ENST00000409823 [bp] 2795 [Protein] 893aa [Translation ID] ENSP00000387125 [CCDS] CCDS46474 [UniProt] P54277 [RefSeq] NM_001128143 NP_001121615 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-010 [Transcript ID] ENST00000447232 [bp] 2576 [Protein] 770aa [Translation ID] ENSP00000401064 [CCDS] CCDS46473 [UniProt] P54277 [RefSeq] NM_001128144 NP_001121616 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-201 [Transcript ID] ENST00000418224 [bp] 3018 [Protein] 667aa [Translation ID] ENSP00000404492 [CCDS] - [UniProt] Q5FBZ9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-006 [Transcript ID] ENST00000424307 [bp] 2153 [Protein] 711aa [Translation ID] ENSP00000389938 [CCDS] - [UniProt] E9PC65 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-004 [Transcript ID] ENST00000409985 [bp] 1882 [Protein] 181aa [Translation ID] ENSP00000386623 [CCDS] - [UniProt] E9PC40 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-011 [Transcript ID] ENST00000409593 [bp] 1668 [Protein] 555aa [Translation ID] ENSP00000387169 [CCDS] - [UniProt] P54277 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-203 [Transcript ID] ENST00000618056 [bp] 1468 [Protein] 248aa [Translation ID] ENSP00000480632 [CCDS] - [UniProt] Q5FBZ4 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-007 [Transcript ID] ENST00000374826 [bp] 948 [Protein] 165aa [Translation ID] ENSP00000363959 [CCDS] - [UniProt] Q5XG96 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-016 [Transcript ID] ENST00000452382 [bp] 881 [Protein] 266aa [Translation ID] ENSP00000396232 [CCDS] - [UniProt] E9PH88 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-014 [Transcript ID] ENST00000424766 [bp] 831 [Protein] 194aa [Translation ID] ENSP00000410082 [CCDS] - [UniProt] C9JF76 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-013 [Transcript ID] ENST00000446877 [bp] 560 [Protein] 44aa [Translation ID] ENSP00000413837 [CCDS] - [UniProt] C9JKP0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-015 [Transcript ID] ENST00000420421 [bp] 331 [Protein] 73aa [Translation ID] ENSP00000391136 [CCDS] - [UniProt] C9J4L1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-005 [Transcript ID] ENST00000342075 [bp] 3012 [Protein] 108aa [Translation ID] ENSP00000343888 [CCDS] - [UniProt] F8W8L1 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-002 [Transcript ID] ENST00000450931 [bp] 2817 [Protein] 659aa [Translation ID] ENSP00000406225 [CCDS] - [UniProt] Q3BDU3 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-008 [Transcript ID] ENST00000447734 [bp] 570 [Protein] 47aa [Translation ID] ENSP00000411151 [CCDS] - [UniProt] Q5FBZ7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-012 [Transcript ID] ENST00000421722 [bp] 2285 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-009 [Transcript ID] ENST00000424059 [bp] 2004 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
78adcede_pt__PMS1_003__ENST00000409823___Biotype | [Name] PMS1-017 [Transcript ID] ENST00000483293 [bp] 663 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PMS1-003 (ENST00000409823) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000064933;r=2:189784501-189877436;t=ENST00000409823 | 47/1438042986806.32_20150728002306-00181-ip-10-236-191-2_431102636_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
eda4f9d6_t__PDPK1_017__ENST00000561962___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-017 (ENST00000561962) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962 | 47/1438042986444.39_20150728002306-00318-ip-10-236-191-2_424999026_0.json |
25ba4244_ipt__HK1_004__ENST00000421088___Flags | [Name] HK1-202 [Transcript ID] ENST00000360289 [bp] 3961 [Protein] 905aa [Translation ID] ENSP00000353433 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7290 [UniProt] P19367 [RefSeq] NM_033500 NP_277035 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: HK1-004 (ENST00000421088) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000156515;r=10:69282555-69364786;t=ENST00000421088 | 47/1438042986806.32_20150728002306-00219-ip-10-236-191-2_429963612_0.json |
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