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7b7d5d7d_t__PDPK1_013__ENST00000441549___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-013 (ENST00000441549) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00113-ip-10-236-191-2_428041235_0.json |
7b7d5d7d_t__PDPK1_013__ENST00000441549___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-013 (ENST00000441549) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00113-ip-10-236-191-2_428041235_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-004 [Transcript ID] ENST00000360537 [bp] 4430 [Protein] 463aa [Translation ID] ENSP00000353734 [CCDS] CCDS5202 [UniProt] Q9UM63 [RefSeq] NM_001289042 NM_001289044 NP_001275971 NP_001275973 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-003 [Transcript ID] ENST00000354765 [bp] 3663 [Protein] 463aa [Translation ID] ENSP00000346810 [CCDS] CCDS5202 [UniProt] Q9UM63 [RefSeq] NM_001080954 NM_001289046 NP_001074423 NP_001275975 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-202 [Transcript ID] ENST00000416623 [bp] 3237 [Protein] 463aa [Translation ID] ENSP00000400060 [CCDS] CCDS5202 [UniProt] Q9UM63 [RefSeq] NM_001289047 NP_001275976 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-011 [Transcript ID] ENST00000625622 [bp] 3216 [Protein] 463aa [Translation ID] ENSP00000486355 [CCDS] CCDS5202 [UniProt] - [RefSeq] NM_001080952 NM_001080953 NM_001289045 NM_001289048 NM_001289049 NM_006718 NP_001074421 NP_001074422 NP_001275974 NP_001275977 NP_001275978 NP_006709 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-204 [Transcript ID] ENST00000444202 [bp] 3197 [Protein] 463aa [Translation ID] ENSP00000400929 [CCDS] CCDS5202 [UniProt] Q9UM63 [RefSeq] NM_001080951 NM_001289043 NP_001074420 NP_001275972 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-001 [Transcript ID] ENST00000367571 [bp] 2800 [Protein] 463aa [Translation ID] ENSP00000356543 [CCDS] CCDS5202 [UniProt] Q9UM63 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-203 [Transcript ID] ENST00000437412 [bp] 2640 [Protein] 411aa [Translation ID] ENSP00000392418 [CCDS] CCDS5203 [UniProt] Q9UM63 [RefSeq] NM_001080955 NM_001289037 NM_001289038 NM_001289039 NM_001289040 NP_001074424 NP_001275966 NP_001275967 NP_001275968 NP_001275969 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-002 [Transcript ID] ENST00000367572 [bp] 2496 [Protein] 411aa [Translation ID] ENSP00000356544 [CCDS] CCDS5203 [UniProt] Q9UM63 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-005 [Transcript ID] ENST00000417959 [bp] 1645 [Protein] 411aa [Translation ID] ENSP00000395960 [CCDS] CCDS5203 [UniProt] Q9UM63 [RefSeq] NM_001080956 NM_001289041 NM_002656 NP_001074425 NP_001275970 NP_002647 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-201 [Transcript ID] ENST00000392307 [bp] 6296 [Protein] 252aa [Translation ID] ENSP00000376124 [CCDS] - [UniProt] Q68DN7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-010 [Transcript ID] ENST00000629195 [bp] 723 [Protein] 64aa [Translation ID] ENSP00000486763 [CCDS] - [UniProt] A1YLA1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-018 [Transcript ID] ENST00000626294 [bp] 593 [Protein] 80aa [Translation ID] ENSP00000487447 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-017 [Transcript ID] ENST00000627449 [bp] 588 [Protein] 73aa [Translation ID] ENSP00000485907 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-015 [Transcript ID] ENST00000626462 [bp] 587 [Protein] 75aa [Translation ID] ENSP00000486752 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-016 [Transcript ID] ENST00000628651 [bp] 563 [Protein] 102aa [Translation ID] ENSP00000486632 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-012 [Transcript ID] ENST00000626373 [bp] 333 [Protein] 12aa [Translation ID] ENSP00000486711 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-008 [Transcript ID] ENST00000629890 [bp] 584 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-009 [Transcript ID] ENST00000626022 [bp] 559 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-013 [Transcript ID] ENST00000628069 [bp] 559 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-014 [Transcript ID] ENST00000628630 [bp] 556 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-006 [Transcript ID] ENST00000493898 [bp] 505 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
ddde5ae2___PLAGL1_204__ENST00000444202___Biotype | [Name] PLAGL1-007 [Transcript ID] ENST00000631184 [bp] 491 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PLAGL1-204 (ENST00000444202) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000118495;r=6:143940302-144064599;t=ENST00000444202 | 11/1438042987171.38_20150728002307-00108-ip-10-236-191-2_429250241_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | PRKACA-001 | [
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a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-003 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-002 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | PRKACA-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-010 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | PRKACA-008 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-005 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name] | PRKACA-007 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-004 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a7c88849___PRKACA_003__ENST00000589994___Name | [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-009 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-001 [Transcript ID] ENST00000368196 [bp] 2701 [Protein] 790aa [Translation ID] ENSP00000357179 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30891 [RefSeq] NM_001012331 NP_001012331 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | P04629 X5DR71 | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-004 [Transcript ID] ENST00000392302 [bp] 2609 [Protein] 760aa [Translation ID] ENSP00000376120 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30890 [RefSeq] NM_001007792 NP_001007793 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | P04629 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NTRK1-006 (ENST00000358660) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198400;r=1:156860894-156881711;t=ENST00000358660 | 11/1438042987171.38_20150728002307-00337-ip-10-236-191-2_433435145_0.json |
a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-007 [Transcript ID] ENST00000524377 [bp] 2432 [Protein] 796aa [Translation ID] ENSP00000431418 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1161 [RefSeq] NM_002529 NP_002520 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [UniProt] | P04629 | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-006 [Transcript ID] ENST00000358660 [bp] 2492 [Protein] 793aa [Translation ID] ENSP00000351486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | J3KP20 | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-002 [Transcript ID] ENST00000497019 [bp] 2508 [Protein] 388aa [Translation ID] ENSP00000436804 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | E9PQG0 | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-011 [Transcript ID] ENST00000531606 [bp] 642 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NTRK1-006 (ENST00000358660) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198400;r=1:156860894-156881711;t=ENST00000358660 | 11/1438042987171.38_20150728002307-00337-ip-10-236-191-2_433435145_0.json |
a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-008 [Transcript ID] ENST00000489021 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NTRK1-006 (ENST00000358660) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198400;r=1:156860894-156881711;t=ENST00000358660 | 11/1438042987171.38_20150728002307-00337-ip-10-236-191-2_433435145_0.json |
a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-005 [Transcript ID] ENST00000530298 [bp] 3052 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-010 [Transcript ID] ENST00000534682 [bp] 844 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | - | [
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a592b769_t__NTRK1_006__ENST00000358660___UniProt | [Name] NTRK1-009 [Transcript ID] ENST00000533630 [bp] 645 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NTRK1-006 (ENST00000358660) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000198400;r=1:156860894-156881711;t=ENST00000358660 | 11/1438042987171.38_20150728002307-00337-ip-10-236-191-2_433435145_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
8530b92c__SYNGAP1_010__ENST00000418600___Flags | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
4094b755__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Orthologues - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Ortholog?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 11/1438042987171.38_20150728002307-00267-ip-10-236-191-2_430462195_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
26f099e5_t__PDPK1_013__ENST00000441549___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Domains & features - Transcript: PDPK1-013 (ENST00000441549) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Domains?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000441549 | 11/1438042988048.90_20150728002308-00184-ip-10-236-191-2_422990298_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-002 [Transcript ID] ENST00000327247 [bp] 2387 [Protein] 536aa [Translation ID] ENSP00000314508 [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_001005741 NM_001005742 NP_001005741 NP_001005742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-001 [Transcript ID] ENST00000368373 [bp] 2276 [Protein] 536aa [Translation ID] ENSP00000357357 [CCDS] CCDS1102 [UniProt] A0A068F658 P04062 [RefSeq] NM_000157 NP_000148 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-015 [Transcript ID] ENST00000427500 [bp] 2063 [Protein] 487aa [Translation ID] ENSP00000402577 [CCDS] CCDS53374 [UniProt] P04062 [RefSeq] NM_001171812 NP_001165283 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-016 [Transcript ID] ENST00000428024 [bp] 1817 [Protein] 449aa [Translation ID] ENSP00000397986 [CCDS] CCDS53373 [UniProt] P04062 [RefSeq] NM_001171811 NP_001165282 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-012 [Transcript ID] ENST00000493842 [bp] 1020 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-005 [Transcript ID] ENST00000478472 [bp] 1005 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-010 [Transcript ID] ENST00000491081 [bp] 892 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-013 [Transcript ID] ENST00000473570 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-009 [Transcript ID] ENST00000460156 [bp] 750 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-006 [Transcript ID] ENST00000484489 [bp] 749 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-007 [Transcript ID] ENST00000497670 [bp] 696 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-014 [Transcript ID] ENST00000467918 [bp] 625 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
b625c400_ipt__GBA_007__ENST00000497670___Biotype | [Name] GBA-003 [Transcript ID] ENST00000464536 [bp] 559 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GBA-007 (ENST00000497670) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000177628;r=1:155204243-155214490;t=ENST00000497670 | 11/1438042987171.38_20150728002307-00058-ip-10-236-191-2_441239541_0.json |
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