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6b61364d__EPB41L3_001__ENST00000341928___Flags | [Name] EPB41L3-029 [Transcript ID] ENST00000581757 [bp] 481 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: EPB41L3-001 (ENST00000341928) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000082397;r=18:5392384-5544242;t=ENST00000341928 | 19/1438042985140.15_20150728002305-00044-ip-10-236-191-2_423410851_0.json |
6b61364d__EPB41L3_001__ENST00000341928___Flags | [Name] EPB41L3-018 [Transcript ID] ENST00000578432 [bp] 229 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: EPB41L3-001 (ENST00000341928) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000082397;r=18:5392384-5544242;t=ENST00000341928 | 19/1438042985140.15_20150728002305-00044-ip-10-236-191-2_423410851_0.json |
6b61364d__EPB41L3_001__ENST00000341928___Flags | [Name] EPB41L3-003 [Transcript ID] ENST00000578618 [bp] 4908 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: EPB41L3-001 (ENST00000341928) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000082397;r=18:5392384-5544242;t=ENST00000341928 | 19/1438042985140.15_20150728002305-00044-ip-10-236-191-2_423410851_0.json |
6b61364d__EPB41L3_001__ENST00000341928___Flags | [Name] EPB41L3-031 [Transcript ID] ENST00000584055 [bp] 731 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: EPB41L3-001 (ENST00000341928) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000082397;r=18:5392384-5544242;t=ENST00000341928 | 19/1438042985140.15_20150728002305-00044-ip-10-236-191-2_423410851_0.json |
6b61364d__EPB41L3_001__ENST00000341928___Flags | [Name] EPB41L3-006 [Transcript ID] ENST00000580866 [bp] 489 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: EPB41L3-001 (ENST00000341928) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000082397;r=18:5392384-5544242;t=ENST00000341928 | 19/1438042985140.15_20150728002305-00044-ip-10-236-191-2_423410851_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-002 [Transcript ID] ENST00000378551 [bp] 3877 [Protein] 387aa [Translation ID] ENSP00000367813 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1816 [UniProt] O75688 [RefSeq] NM_177968 NP_808907 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-004 [Transcript ID] ENST00000409432 [bp] 3025 [Protein] 380aa [Translation ID] ENSP00000387287 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46271 [UniProt] O75688 [RefSeq] NM_001033557 NP_001028729 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-001 [Transcript ID] ENST00000282412 [bp] 2606 [Protein] 479aa [Translation ID] ENSP00000282412 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1817 [UniProt] O75688 [RefSeq] NM_002706 NP_002697 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-003 [Transcript ID] ENST00000345249 [bp] 1713 [Protein] 192aa [Translation ID] ENSP00000326089 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1818 [UniProt] O75688 [RefSeq] NM_177969 NP_808908 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-005 [Transcript ID] ENST00000419807 [bp] 2084 [Protein] 378aa [Translation ID] ENSP00000390087 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JIR6 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-011 [Transcript ID] ENST00000409473 [bp] 923 [Protein] 303aa [Translation ID] ENSP00000386982 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B8ZZF0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-007 [Transcript ID] ENST00000378540 [bp] 1703 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-010 [Transcript ID] ENST00000459690 [bp] 676 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-009 [Transcript ID] ENST00000487286 [bp] 535 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-006 [Transcript ID] ENST00000409486 [bp] 1481 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
2509f666__Gene__PPM1B__ENSG00000138032___Flags | [Name] PPM1B-012 [Transcript ID] ENST00000488866 [bp] 981 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PPM1B (ENSG00000138032) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138032;r=2:44167969-44244384 | 19/1438044160065.87_20150728004240-00218-ip-10-236-191-2_432183767_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
9f174ba6__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000197283;r=6:33414488-33415937;t=ENST00000418600 | 11/1438042988048.90_20150728002308-00039-ip-10-236-191-2_442386450_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-001 [Transcript ID] ENST00000295588 [bp] 3533 [Protein] 392aa [Translation ID] ENSP00000295588 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2988 [UniProt] Q8NBL1 [RefSeq] NM_152305 NP_689518 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-004 [Transcript ID] ENST00000476573 [bp] 567 [Protein] 189aa [Translation ID] ENSP00000419865 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C5H0 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-003 [Transcript ID] ENST00000486607 [bp] 1420 [Protein] 163aa [Translation ID] ENSP00000419876 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WEW4 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-002 [Transcript ID] ENST00000497447 [bp] 1361 [Protein] 187aa [Translation ID] ENSP00000419288 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] B4DVA9 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-006 [Transcript ID] ENST00000460339 [bp] 589 [Protein] 111aa [Translation ID] ENSP00000420594 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WDC4 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-007 [Transcript ID] ENST00000473648 [bp] 3598 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-005 [Transcript ID] ENST00000390401 [bp] 731 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
ea65e940_ene__POGLUT1__ENSG00000163389___Flags | [Name] POGLUT1-008 [Transcript ID] ENST00000481043 [bp] 424 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: POGLUT1 (ENSG00000163389) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000163389;r=3:119468938-119494708 | 11/1438042981460.12_20150728002301-00113-ip-10-236-191-2_426968297_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-001 [Transcript ID] ENSMUST00000112863 [bp] 8657 [Protein] 559aa [Translation ID] ENSMUSP00000108484 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS57779 [UniProt] Q61036 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-002 [Transcript ID] ENSMUST00000112864 [bp] 8612 [Protein] 544aa [Translation ID] ENSMUSP00000108485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30454 [UniProt] Q61036 [RefSeq] NM_001195049 NP_001181978 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-004 [Transcript ID] ENSMUST00000112865 [bp] 8484 [Protein] 544aa [Translation ID] ENSMUSP00000108486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30454 [UniProt] Q61036 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-008 [Transcript ID] ENSMUST00000033640 [bp] 8348 [Protein] 559aa [Translation ID] ENSMUSP00000033640 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS57779 [UniProt] Q61036 [RefSeq] NM_001195046 NM_001195048 NP_001181975 NP_001181977 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-005 [Transcript ID] ENSMUST00000112868 [bp] 8163 [Protein] 544aa [Translation ID] ENSMUSP00000108489 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30454 [UniProt] Q61036 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-201 [Transcript ID] ENSMUST00000172330 [bp] 8135 [Protein] 544aa [Translation ID] ENSMUSP00000126562 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30454 [UniProt] Q61036 [RefSeq] NM_001195047 NM_008778 NP_001181976 NP_032804 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-009 [Transcript ID] ENSMUST00000134402 [bp] 1351 [Protein] 366aa [Translation ID] ENSMUSP00000119090 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A3KGC5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-006 [Transcript ID] ENSMUST00000156449 [bp] 716 [Protein] 155aa [Translation ID] ENSMUSP00000118716 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A3KGC3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-007 [Transcript ID] ENSMUST00000155215 [bp] 701 [Protein] 195aa [Translation ID] ENSMUSP00000118549 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A3KGC4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
567f5a84_ene__Pak3__ENSMUSG00000031284___Flags | [Name] Pak3-003 [Transcript ID] ENSMUST00000126592 [bp] 451 [Protein] 23aa [Translation ID] ENSMUSP00000114352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A3KGC2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Pak3 (ENSMUSG00000031284) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031284;r=X:143518591-143797796 | 11/1438042988048.90_20150728002308-00322-ip-10-236-191-2_417275860_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000594239 [bp] 2299 [Protein] 419aa [Translation ID] ENSP00000471166 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14757 [UniProt] Q9Y6K9 [RefSeq] NM_001099857 NP_001093327 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Name] | IKBKG-004 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000611071 [bp] 2103 [Protein] 419aa [Translation ID] ENSP00000479662 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14757 [UniProt] Q9Y6K9 [RefSeq] NM_003639 NP_003630 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Name] | IKBKG-005 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000618670 [bp] 2069 [Protein] 487aa [Translation ID] ENSP00000483825 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS48196 [UniProt] Q9Y6K9 [RefSeq] NM_001099856 NP_001093326 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | IKBKG-002 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000611176 [bp] 1654 [Protein] 320aa [Translation ID] ENSP00000478616 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS48197 [UniProt] Q9Y6K9 [RefSeq] NM_001145255 NP_001138727 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | IKBKG-006 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000617207 [bp] 1949 [Protein] 418aa [Translation ID] ENSP00000484023 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X1B1 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Name] | IKBKG-017 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000619941 [bp] 1463 [Protein] 412aa [Translation ID] ENSP00000478979 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUW6 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | IKBKG-014 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000615874 [bp] 1460 [Protein] 411aa [Translation ID] ENSP00000483381 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X0G7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | IKBKG-016 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000440286 [bp] 960 [Protein] 251aa [Translation ID] ENSP00000394934 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JN51 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | IKBKG-007 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000413620 [bp] 892 [Protein] 195aa [Translation ID] ENSP00000398579 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J2V2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | IKBKG-009 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000422680 [bp] 841 [Protein] 173aa [Translation ID] ENSP00000390368 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JH59 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | IKBKG-008 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000445622 [bp] 693 [Protein] 138aa [Translation ID] ENSP00000395205 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JCG6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | IKBKG-012 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000492469 [bp] 552 [Protein] 181aa [Translation ID] ENSP00000484275 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X1K7 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | IKBKG-010 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000615186 [bp] 488 [Protein] 115aa [Translation ID] ENSP00000479144 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WV30 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | IKBKG-013 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000612051 [bp] 1972 [Protein] 48aa [Translation ID] ENSP00000480431 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A087WWQ9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | IKBKG-003 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
abb91624_t__IKBKG_012__ENST00000445622___Name | [Transcript ID] ENST00000617838 [bp] 285 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | IKBKG-015 | [] | Ensembl genome browser 81: Homo sapiens - Variations - Transcript: IKBKG-012 (ENST00000445622) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProtVariations?db=core;g=ENSG00000269335;r=X:153774142-153786761;t=ENST00000445622 | 11/1438042988048.90_20150728002308-00275-ip-10-236-191-2_423028349_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
99306610__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000154277;r=4:41258925-41270445;t=ENST00000381760 | 11/1438042988048.90_20150728002308-00095-ip-10-236-191-2_430243096_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-001 [Transcript ID] ENST00000342228 [bp] 3657 [Protein] 652aa [Translation ID] ENSP00000340465 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_006749 NP_006740 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-002 [Transcript ID] ENST00000520262 [bp] 2992 [Protein] 652aa [Translation ID] ENSP00000429754 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_001257180 NP_001244109 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-003 [Transcript ID] ENST00000520179 [bp] 2284 [Protein] 652aa [Translation ID] ENSP00000429712 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6132 [UniProt] Q08357 [RefSeq] NM_001257181 NP_001244110 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-009 [Transcript ID] ENST00000522707 [bp] 751 [Protein] 47aa [Translation ID] ENSP00000429299 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RIX1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-005 [Transcript ID] ENST00000518717 [bp] 573 [Protein] 78aa [Translation ID] ENSP00000430166 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RGG8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-013 [Transcript ID] ENST00000518384 [bp] 557 [Protein] 28aa [Translation ID] ENSP00000430462 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJW9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-010 [Transcript ID] ENST00000517366 [bp] 533 [Protein] 71aa [Translation ID] ENSP00000427756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RGJ6 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-014 [Transcript ID] ENST00000524211 [bp] 968 [Protein] 105aa [Translation ID] ENSP00000429989 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E5RGM8 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-006 [Transcript ID] ENST00000523340 [bp] 1265 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-011 [Transcript ID] ENST00000518660 [bp] 763 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-004 [Transcript ID] ENST00000524237 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-007 [Transcript ID] ENST00000521455 [bp] 411 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-008 [Transcript ID] ENST00000519463 [bp] 388 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
adee1e68_ene__SLC20A2__ENSG00000168575___Flags | [Name] SLC20A2-012 [Transcript ID] ENST00000522401 [bp] 577 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: SLC20A2 (ENSG00000168575) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000168575;r=8:42273993-42397069;t=ENST00000342228 | 11/1438042981460.12_20150728002301-00212-ip-10-236-191-2_418039855_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-004 [Transcript ID] ENSMUST00000134469 [bp] 4392 [Protein] 929aa [Translation ID] ENSMUSP00000119530 [CCDS] CCDS49674 [UniProt] Q8K4J6 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-001 [Transcript ID] ENSMUST00000149582 [bp] 4366 [Protein] 929aa [Translation ID] ENSMUSP00000117745 [CCDS] CCDS49674 [UniProt] Q8K4J6 [RefSeq] NM_001082536 NP_001076005 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-002 [Transcript ID] ENSMUST00000109579 [bp] 4154 [Protein] 964aa [Translation ID] ENSMUSP00000105207 [CCDS] CCDS37147 [UniProt] Q8K4J6 [RefSeq] NM_153049 NP_694629 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-005 [Transcript ID] ENSMUST00000131235 [bp] 4222 [Protein] 879aa [Translation ID] ENSMUSP00000120116 [CCDS] - [UniProt] D3YUI2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-003 [Transcript ID] ENSMUST00000135047 [bp] 2367 [Protein] 705aa [Translation ID] ENSMUSP00000118451 [CCDS] - [UniProt] D3YUG5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-007 [Transcript ID] ENSMUST00000123243 [bp] 849 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-010 [Transcript ID] ENSMUST00000138769 [bp] 702 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-009 [Transcript ID] ENSMUST00000145779 [bp] 627 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-006 [Transcript ID] ENSMUST00000147921 [bp] 500 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
87b3e479_ene__Mkl1__ENSMUSG00000042292___Biotype | [Name] Mkl1-008 [Transcript ID] ENSMUST00000154797 [bp] 499 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mkl1 (ENSMUSG00000042292) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000042292;r=15:81012281-81190757 | 11/1438042988048.90_20150728002308-00338-ip-10-236-191-2_435582115_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
ca1da4d2___PRKACA_003__ENST00000589994___Biotype | [Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-003 (ENST00000589994) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000589994 | 11/1438042988048.90_20150728002308-00167-ip-10-236-191-2_436522399_0.json |
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