diff --git a/bcbio/upload/__init__.py b/bcbio/upload/__init__.py
index <HASH>..<HASH> 100644
--- a/bcbio/upload/__init__.py
+++ b/bcbio/upload/__init__.py
@@ -727,6 +727,7 @@ def _get_files_project(sample, upload_config):
         out.append({"path": dd.get_merged_gtf(sample)})
     if dd.get_dexseq_counts(sample):
         out.append({"path": dd.get_dexseq_counts(sample)})
+        out.append({"path": "%s.ann" % dd.get_dexseq_counts(sample)})
     if dd.get_express_counts(sample):
         out.append({"path": dd.get_express_counts(sample)})
     if dd.get_express_fpkm(sample):
UPLOAD::add dexseq.ann to the final folder as well.