Include cyvcf2 when running GEMINI upgrade Fixes
MODIFY
gemini/gemini_update.py
gemini/gemini_update.py
@@ -19,7 +19,8 @@ def release(parser, args):
if not args.dataonly:
if not os.path.exists(conda_bin):
raise NotImplementedError("Can only upgrade gemini installed with anaconda")
- subprocess.check_call([conda_bin, "install", "-y", "-c", "bioconda", "gemini", "pip"])
+ subprocess.check_call([conda_bin, "install", "-y", "-c", "conda-forget", "-c", "bioconda",
+ "gemini", "cyvcf2", "pip"])
if args.devel:
subprocess.check_call([pip_bin, "install", "--upgrade", "--no-deps",
"git+%s" % repo])

Include cyvcf2 when running GEMINI upgrade Fixes #808