Better handling of software archives
Unpack a single ZIP file, then move it to the root of the directory
MODIFY
repo2docker/contentproviders/zenodo.py
repo2docker/contentproviders/zenodo.py
+import os
import json
import shutil
@@ -31,30 +32,41 @@ class Zenodo(ContentProvider):
record = json.loads(resp.read().decode("utf-8"))
def _fetch(file_ref, unzip=False):
+ # the assumption is that `unzip=True` means that this is the only
+ # file related to the zenodo record
with urlopen(file_ref["links"]["download"]) as src:
fname = file_ref["filename"]
+ if path.dirname(fname):
sub_dir = path.join(output_dir, path.dirname(fname))
if not path.exists(sub_dir):
- print("Creating", sub_dir)
+ yield 'Creating {}\n'.format(sub_dir)
makedirs(sub_dir, exist_ok=True)
dst_fname = path.join(output_dir, fname)
with open(dst_fname, "wb") as dst:
yield "Fetching {}\n".format(fname)
shutil.copyfileobj(src, dst)
-
# first close the newly written file, then continue
# processing it
if unzip and is_zipfile(dst_fname):
+ yield "Extracting {}\n".format(fname)
zfile = ZipFile(dst_fname)
zfile.extractall(path=output_dir)
zfile.close()
- import os
- d = os.listdir(output_dir)[0]
- print(output_dir)
- print(os.listdir(output_dir))
- copytree(path.join(output_dir, d), output_dir)
+
+ # delete downloaded file ...
+ os.remove(dst_fname)
+ # ... and any directories we might have created,
+ # in which case sub_dir will be defined
+ if path.dirname(fname):
shutil.rmtree(sub_dir)
+
+ new_subdirs = os.listdir(output_dir)
+ # if there is only one new subdirectory move its contents
+ # to the top level directory
+ if len(new_subdirs) == 1:
+ d = new_subdirs[0]
+ copytree(path.join(output_dir, d), output_dir)
shutil.rmtree(path.join(output_dir, d))
is_software = record["metadata"]["upload_type"] == "software"
@@ -63,8 +75,6 @@ class Zenodo(ContentProvider):
for line in _fetch(file_ref, unzip=is_software and only_one_file):
yield line
- import pdb; pdb.set_trace()
-
@property
def content_id(self):
"""A unique ID to represent the version of the content.

Better handling of software archives

Unpack a single ZIP file, then move it to the root of the directory