set compound-het priority to be float
default to 1.5 so denovos are included.
MODIFY
gemini/gemini_main.py
gemini/gemini_main.py
@@ -701,10 +701,10 @@ def main():
default=False)
parser_comp_hets.add_argument('--max-priority',
- type=int,
+ type=float,
help='Default (1) is to show only confident compound hets. Set to 2' \
+ ' or higher to include pairs that are less likely true comp-hets',
- default=1)
+ default=1.6)
def comp_hets_fn(parser, args):
from gemini.gim import CompoundHet

set compound-het priority to be float

default to 1.5 so denovos are included.