fix loading for ipython multicore if vcf is not in pwd
MODIFY
gemini/gemini_load.py
gemini/gemini_load.py
@@ -348,7 +348,7 @@ def load_chunk(chunk_step, kwargs):
args["vcf"] = os.path.abspath(args["vcf"])
gemini_load = gemini_pipe_load_cmd().format(**args)
subprocess.check_call(gemini_load, shell=True)
- chunk_db = kwargs["chunk_dir"] + args["vcf"] + ".chunk" + str(chunk_num) + ".db"
+ chunk_db = kwargs["chunk_dir"] + os.path.basename(args["vcf"]) + ".chunk" + str(chunk_num) + ".db"
return chunk_db
def wait_until_finished(procs):

MODIFY
gemini/version.py
gemini/version.py
-__version__ = "0.20.1"
+__version__ = "0.20.2-dev"

fix loading for ipython multicore if vcf is not in pwd