Add support for innstalling different versions of R
MODIFY
repo2docker/buildpacks/r.py
repo2docker/buildpacks/r.py
@@ -55,6 +55,21 @@ class RBuildPack(PythonBuildPack):
return self._runtime
+ @property
+ def r_version(self):
+ """Detect the R version for a given `runtime.txt`
+
+ Will return '' (false-y string) as the default or other 'x.y'
+ version if found.
+ """
+ if not hasattr(self, "_r_version"):
+ if self._runtime.startswith("r-"):
+ _, self._r_version, _ = self._runtime.split("-", 2)
+ else:
+ self._r_version = ""
+
+ return self._r_version
+
@property
def checkpoint_date(self):
"""
@@ -63,11 +78,14 @@ class RBuildPack(PythonBuildPack):
Returns '' if no date is specified
"""
if not hasattr(self, "_checkpoint_date"):
- match = re.match(r"r-(\d\d\d\d)-(\d\d)-(\d\d)", self.runtime)
+ match = re.match(r"r-(\d.\d-)?(\d\d\d\d)-(\d\d)-(\d\d)", self.runtime)
if not match:
self._checkpoint_date = False
else:
- self._checkpoint_date = datetime.date(*[int(s) for s in match.groups()])
+ # turn the last three groups of the match into a date
+ self._checkpoint_date = datetime.date(
+ *[int(s) for s in match.groups()[-3:]]
+ )
return self._checkpoint_date
@@ -127,20 +145,17 @@ class RBuildPack(PythonBuildPack):
We install a base version of R, and packages required for RStudio to
be installed.
"""
- return (
- super()
- .get_packages()
- .union(
- [
- "r-base",
+ packages = [
# For rstudio
"psmisc",
"libapparmor1",
"sudo",
"lsb-release",
]
- )
- )
+ if not self.r_version:
+ packages.append("r-base")
+
+ return super().get_packages().union(packages)
def get_build_scripts(self):
"""
@@ -180,7 +195,34 @@ class RBuildPack(PythonBuildPack):
self.checkpoint_date.isoformat()
)
- scripts = [
+ scripts = []
+ if self.r_version == "3.6":
+ scripts += [
+ (
+ "root",
+ r"""
+ echo "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/" > /etc/apt/sources.list.d/r3.6-ubuntu.list
+ """,
+ ),
+ (
+ "root",
+ r"""
+ apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
+ """,
+ ),
+ (
+ "root",
+ r"""
+ apt-get update && \
+ apt-get install --yes r-base-dev && \
+ apt-get -qq purge && \
+ apt-get -qq clean && \
+ rm -rf /var/lib/apt/lists/*
+ """,
+ ),
+ ]
+
+ scripts += [
(
"root",
r"""

Add support for innstalling different versions of R