/* Copyright (C) 2010 Univ. of Massachusetts Amherst, Computer Science Dept.
   This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit).
   http://www.cs.umass.edu/~mccallum/mallet
   This software is provided under the terms of the Common Public License,
   version 1.0, as published by http://www.opensource.org.  For further
   information, see the file `LICENSE' included with this distribution. */

package cc.mallet.classify.tui;

import java.util.ArrayList;
import java.util.logging.*;
import java.io.*;
import java.nio.charset.Charset;

import cc.mallet.pipe.*;
import cc.mallet.pipe.iterator.*;
import cc.mallet.types.*;
import cc.mallet.util.*;

/**
 * Command line import tool for loading a sequence of 
 *  instances from an SVMLight feature-value pair file, with one instance 
 *  per line of the input file. 
 *  <p>
 *  
 * The expected format is
 * 
 * target feature:value feature:value ...
 * 
 * targets and features can be indices, as in 
 * SVMLight, or Strings.
 * 
 * Note that if targets and features are indices,
 * their indices in the data and target Alphabets
 * may be different, though the data will be
 * equivalent.  
 * 
 * Note that the input and output args can take multiple files.
 * 
 *  @author Gregory Druck
 */

public class SvmLight2Vectors {

	private static Logger logger = MalletLogger.getLogger(SvmLight2Vectors.class.getName());

	static CommandOption.SpacedStrings inputFiles =	new CommandOption.SpacedStrings
		(SvmLight2Vectors.class, "input", "FILE", true, null,
		 "The files containing data to be classified, one instance per line", null);

	static CommandOption.SpacedStrings outputFiles = new CommandOption.SpacedStrings
		(SvmLight2Vectors.class, "output", "FILE", true, null,
		 "Write the instance list to this file; Using - indicates stdout.", null);
	
	static CommandOption.File usePipeFromVectorsFile = new CommandOption.File
		(SvmLight2Vectors.class, "use-pipe-from", "FILE", true, new File("text.vectors"),
		 "Use the pipe and alphabets from a previously created vectors file.\n" +
		 "   Allows the creation, for example, of a test set of vectors that are\n" +
		 "   compatible with a previously created set of training vectors", null);

	static CommandOption.Boolean printOutput = new CommandOption.Boolean
		(SvmLight2Vectors.class, "print-output", "[TRUE|FALSE]", false, false,
		 "If true, print a representation of the processed data\n" +
		 "   to standard output. This option is intended for debugging.", null);

	static CommandOption.String encoding = new CommandOption.String
	  (SvmLight2Vectors.class, "encoding", "STRING", true, Charset.defaultCharset().displayName(),
	 "Character encoding for input file", null);

	public static void main (String[] args) throws FileNotFoundException, IOException
	{
		// Process the command-line options
		CommandOption.setSummary (SvmLight2Vectors.class,
								  "A tool for creating instance lists of feature vectors from comma-separated-values");
		CommandOption.process (SvmLight2Vectors.class, args);

		// Print some helpful messages for error cases
		if (args.length == 0) {
			CommandOption.getList(SvmLight2Vectors.class).printUsage(false);
			System.exit (-1);
		}
		if (inputFiles == null) {
			throw new IllegalArgumentException ("You must include `--input FILE FILE ...' in order to specify "+
								"files containing the instances, one per line.");
		}
		
		Pipe instancePipe;
		InstanceList previousInstanceList = null;
		
		if (usePipeFromVectorsFile.wasInvoked()) {

			// Ignore all options, use a previously created pipe

			previousInstanceList = InstanceList.load (usePipeFromVectorsFile.value);
			instancePipe = previousInstanceList.getPipe();			
		}
		else {
			// Build a new pipe
			ArrayList<Pipe> pipeList = new ArrayList<Pipe>();
			pipeList.add(new SvmLight2FeatureVectorAndLabel());
			if (printOutput.value) {
				pipeList.add(new PrintInputAndTarget());
			}
			instancePipe = new SerialPipes(pipeList);
		}

		if (inputFiles.value.length != outputFiles.value.length) {
			throw new RuntimeException("Number of input and output files must be the same.");
		}

		for (int fileIndex = 0; fileIndex < inputFiles.value.length; fileIndex++) {
			// Create the instance list and open the input file
			InstanceList instances = new InstanceList (instancePipe);
			Reader fileReader;
			if (inputFiles.value[fileIndex].equals ("-")) {
				fileReader = new InputStreamReader (System.in);
			}
			else {
				fileReader = new InputStreamReader(new FileInputStream(inputFiles.value[fileIndex]), encoding.value);
			}
			
			// Read instances from the file
			instances.addThruPipe (new SelectiveFileLineIterator (fileReader, "^\\s*#.+"));
			
			// Save instances to output file
			ObjectOutputStream oos;
			if (outputFiles.value[fileIndex].toString().equals ("-")) {
				oos = new ObjectOutputStream(System.out);
			}
			else {
				oos = new ObjectOutputStream(new FileOutputStream(outputFiles.value[fileIndex]));
			}
			oos.writeObject(instances);
			oos.close();
		}

		//  If we are reusing a pipe from an instance list 
		//  created earlier, we may have extended the label
		//  or feature alphabets. To maintain compatibility,
		//  we now save that original instance list back to disk
		//  with the new alphabet.
		if (usePipeFromVectorsFile.wasInvoked()) {
			System.out.println(" Rewriting extended pipe from " + usePipeFromVectorsFile.value);
			System.out.println("  Instance ID = " + previousInstanceList.getPipe().getInstanceId());
			ObjectOutputStream oos = new ObjectOutputStream(new FileOutputStream(usePipeFromVectorsFile.value));
			oos.writeObject(previousInstanceList);
			oos.close();
		}
	}
}

	

