metadata

license: apache-2.0
task_categories:
  - text-classification
tags:
  - protein
  - downstream task

PETA_LGK_Sol Dataset

Description: Solubility mutation dataset.
Number of labels: 1
Problem Type: regression
Columns:
- aa_seq: protein amino acid sequence

Github

PETA: evaluating the impact of protein transfer learning with sub-word tokenization on downstream applications

https://github.com/ginnm/ProteinPretraining

VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning

https://github.com/ai4protein/VenusFactory

Citation

Please cite our work if you use our dataset.

@article{tan2024peta,
  title={PETA: evaluating the impact of protein transfer learning with sub-word tokenization on downstream applications},
  author={Tan, Yang and Li, Mingchen and Zhou, Ziyi and Tan, Pan and Yu, Huiqun and Fan, Guisheng and Hong, Liang},
  journal={Journal of Cheminformatics},
  volume={16},
  number={1},
  pages={92},
  year={2024},
  publisher={Springer}
}

@article{tan2025venusfactory,
  title={VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning},
  author={Tan, Yang and Liu, Chen and Gao, Jingyuan and Wu, Banghao and Li, Mingchen and Wang, Ruilin and Zhang, Lingrong and Yu, Huiqun and Fan, Guisheng and Hong, Liang and Zhou, Bingxin},
  journal={arXiv preprint arXiv:2503.15438},
  year={2025}
}