Update README.md
Browse filescc
@michellemli
README.md
CHANGED
@@ -31,7 +31,7 @@ from tdc.resource.pinnacle import PINNACLE
|
|
31 |
pinnacle = PINNACLE()
|
32 |
embeds = pinnacle.get_embeds()
|
33 |
```
|
34 |
-
We share here
|
35 |
https://colab.research.google.com/drive/14WeNbDNyDi_45hFayBMtt2MBOvhyRRvy?usp=sharing
|
36 |
|
37 |
## TDC Citation
|
@@ -46,6 +46,14 @@ url={https://openreview.net/forum?id=kL8dlYp6IM}
|
|
46 |
}
|
47 |
```
|
48 |
|
49 |
-
##
|
50 |
-
*
|
51 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
31 |
pinnacle = PINNACLE()
|
32 |
embeds = pinnacle.get_embeds()
|
33 |
```
|
34 |
+
We also share here the code used to benchmark PINNACLE on the TDC.scDTI task.
|
35 |
https://colab.research.google.com/drive/14WeNbDNyDi_45hFayBMtt2MBOvhyRRvy?usp=sharing
|
36 |
|
37 |
## TDC Citation
|
|
|
46 |
}
|
47 |
```
|
48 |
|
49 |
+
## Additional Citations
|
50 |
+
* Li, Michelle, et al. “Contextual AI models for single-cell protein biology” Nature Methods (2024)
|
51 |
+
|
52 |
+
## Model Homepage
|
53 |
+
https://huggingface.co/spaces/michellemli/PINNACLE
|
54 |
+
|
55 |
+
## Model Github
|
56 |
+
https://github.com/mims-harvard/PINNACLE
|
57 |
+
|
58 |
+
## Dataset
|
59 |
+
Dataset entry in Therapeutics Data Commons for single-cell drug-target nomination https://tdcommons.ai/multi_pred_tasks/scdti/
|