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remove load ckpt and img from model
Browse files
app.py
CHANGED
@@ -9,13 +9,13 @@ from cell_segmentation.inference.inference_cellvit_experiment_monuseg import Inf
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## local | remote
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RUN_MODE = "remote"
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if RUN_MODE != "local":
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## step 1: set up model
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## local | remote
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RUN_MODE = "remote"
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# if RUN_MODE != "local":
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# os.system("wget https://huggingface.co/xiazhi/LKCell-demo/resolve/main/model_best.pth")
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# ## examples
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# os.system("wget https://huggingface.co/xiazhi/LKCell-demo/resolve/main/1.png")
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# os.system("wget https://huggingface.co/xiazhi/LKCell-demo/resolve/main/2.png")
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# os.system("wget https://huggingface.co/xiazhi/LKCell-demo/resolve/main/3.png")
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# os.system("wget https://huggingface.co/xiazhi/LKCell-demo/resolve/main/4.png")
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## step 1: set up model
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cell_segmentation/inference/inference_cellvit_experiment_monuseg.py
CHANGED
@@ -876,7 +876,6 @@ class MoNuSegInference:
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placeholder[: h, 3 * w : 4 * w, :3] = np.asarray(pred_cell_image) / 255
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# plotting
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test_image = Image.fromarray((placeholder * 255).astype(np.uint8))
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fig, axs = plt.subplots(figsize=(3, 2), dpi=1200)
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axs.imshow(placeholder)
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axs.set_xticks(np.arange(w / 2, 4 * w, w))
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placeholder[: h, 3 * w : 4 * w, :3] = np.asarray(pred_cell_image) / 255
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# plotting
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fig, axs = plt.subplots(figsize=(3, 2), dpi=1200)
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axs.imshow(placeholder)
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axs.set_xticks(np.arange(w / 2, 4 * w, w))
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