simonduerr commited on
Commit
585edee
·
1 Parent(s): 9d70db0

update environment and boltz2 version

Browse files
Files changed (2) hide show
  1. app.py +2 -2
  2. requirements.txt +1 -1
app.py CHANGED
@@ -116,12 +116,12 @@ def predict(jobname, inputs, recycling_steps, sampling_steps, diffusion_samples)
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  os.system(f"boltz predict {jobname}/{jobname}.yaml --use_msa_server --out_dir {jobname} --recycling_steps {recycling_steps} --sampling_steps {sampling_steps} --diffusion_samples {diffusion_samples} --override --output_format pdb")
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  print(os.listdir(jobname))
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  print(os.listdir(f"{jobname}/boltz_results_{jobname}/predictions/"))
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- return Molecule3D(f"{jobname}/boltz_results_{jobname}/predictions/{jobname}_model_0.cif", label="Output", reps=representations)
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  except Exception as e:
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  raise gr.Error(f"failed with error:{e}")
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  with gr.Blocks() as blocks:
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- gr.Markdown("# Boltz-1")
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  gr.Markdown("""Open GUI for running [Boltz-1 model](https://github.com/jwohlwend/boltz/) <br>
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  Key components:
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  - MMSeqs2 Webserver [Mirdita et al.](https://www.nature.com/articles/s41592-022-01488-1)
 
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  os.system(f"boltz predict {jobname}/{jobname}.yaml --use_msa_server --out_dir {jobname} --recycling_steps {recycling_steps} --sampling_steps {sampling_steps} --diffusion_samples {diffusion_samples} --override --output_format pdb")
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  print(os.listdir(jobname))
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  print(os.listdir(f"{jobname}/boltz_results_{jobname}/predictions/"))
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+ return Molecule3D(f"{jobname}/boltz_results_{jobname}/predictions/{jobname}/{jobname}_model_0.cif", label="Output", reps=representations)
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  except Exception as e:
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  raise gr.Error(f"failed with error:{e}")
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  with gr.Blocks() as blocks:
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+ gr.Markdown("# Boltz")
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  gr.Markdown("""Open GUI for running [Boltz-1 model](https://github.com/jwohlwend/boltz/) <br>
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  Key components:
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  - MMSeqs2 Webserver [Mirdita et al.](https://www.nature.com/articles/s41592-022-01488-1)
requirements.txt CHANGED
@@ -1,3 +1,3 @@
1
- boltz
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  gradio_molecule3d
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  gradio_cofoldinginput
 
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+ boltz[cuda]
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  gradio_molecule3d
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  gradio_cofoldinginput