Spaces:
Runtime error
Runtime error
Commit
·
37b8d56
1
Parent(s):
747926d
Update app.py
Browse files
app.py
CHANGED
|
@@ -1,4 +1,5 @@
|
|
| 1 |
import gradio as gr
|
|
|
|
| 2 |
from transformers import pipeline
|
| 3 |
from sentence_transformers import CrossEncoder
|
| 4 |
|
|
@@ -17,9 +18,9 @@ def fetch_answers(question, clincal_note ):
|
|
| 17 |
top_5_query_paragraph_answer_list = []
|
| 18 |
for query, passage in top_5_query_paragraph_list:
|
| 19 |
answer = qa_model(question = query, context = passage)['answer']
|
| 20 |
-
top_5_query_paragraph_answer_list.append([
|
| 21 |
|
| 22 |
-
return top_5_query_paragraph_answer_list
|
| 23 |
|
| 24 |
demo = gr.Interface(
|
| 25 |
fn=fetch_answers,
|
|
@@ -27,7 +28,7 @@ demo = gr.Interface(
|
|
| 27 |
#clinical note upload as file (.This is an example of simple text. or doc/docx file)
|
| 28 |
inputs=[gr.Textbox(lines=2, label='Question', show_label=True, placeholder="What is age of patient ?"),
|
| 29 |
gr.Textbox(lines=10, label='Clinical Note', show_label=True, placeholder="The patient is a 71 year old male...")],
|
| 30 |
-
outputs="
|
| 31 |
examples='.',
|
| 32 |
title='Question Answering System from Clinical Notes for Physicians',
|
| 33 |
description="""Physicians frequently seek answers to questions from a patient’s EHR to support clinical decision-making. It is not too hard to imagine a future where a physician interacts with an EHR system and asks it complex questions and expects precise answers with adequate context from a patient’s past clinical notes. Central to such a world is a medical question answering system that processes natural language questions asked by physicians and finds answers to the questions from all sources in a patient’s record."""
|
|
|
|
| 1 |
import gradio as gr
|
| 2 |
+
import pandas as pd
|
| 3 |
from transformers import pipeline
|
| 4 |
from sentence_transformers import CrossEncoder
|
| 5 |
|
|
|
|
| 18 |
top_5_query_paragraph_answer_list = []
|
| 19 |
for query, passage in top_5_query_paragraph_list:
|
| 20 |
answer = qa_model(question = query, context = passage)['answer']
|
| 21 |
+
top_5_query_paragraph_answer_list.append([passage, answer])
|
| 22 |
|
| 23 |
+
return pd.DataFrame(data = top_5_query_paragraph_answer_list, columns=['Relevant Paragraph', 'Extracted Answer'])
|
| 24 |
|
| 25 |
demo = gr.Interface(
|
| 26 |
fn=fetch_answers,
|
|
|
|
| 28 |
#clinical note upload as file (.This is an example of simple text. or doc/docx file)
|
| 29 |
inputs=[gr.Textbox(lines=2, label='Question', show_label=True, placeholder="What is age of patient ?"),
|
| 30 |
gr.Textbox(lines=10, label='Clinical Note', show_label=True, placeholder="The patient is a 71 year old male...")],
|
| 31 |
+
outputs="dataframe",
|
| 32 |
examples='.',
|
| 33 |
title='Question Answering System from Clinical Notes for Physicians',
|
| 34 |
description="""Physicians frequently seek answers to questions from a patient’s EHR to support clinical decision-making. It is not too hard to imagine a future where a physician interacts with an EHR system and asks it complex questions and expects precise answers with adequate context from a patient’s past clinical notes. Central to such a world is a medical question answering system that processes natural language questions asked by physicians and finds answers to the questions from all sources in a patient’s record."""
|