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388fbdd
1
Parent(s):
bc29af4
Update app.py
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app.py
CHANGED
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@@ -13,17 +13,16 @@ st.title("Epidemiology Extraction Pipeline for Rare Diseases")
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st.subheader("National Center for Advancing Translational Sciences (NIH/NCATS)")
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-
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#### CHANGE SIDEBAR WIDTH ###
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st.markdown(
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"""
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<style>
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[data-testid="stSidebar"][aria-expanded="true"] > div:first-child {
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width:
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}
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[data-testid="stSidebar"][aria-expanded="false"] > div:first-child {
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width:
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margin-left: -
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}
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</style>
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""",
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@@ -37,11 +36,17 @@ filtering = st.sidebar.radio("What type of filtering would you like?",('Strict',
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extract_diseases = st.sidebar.checkbox("Extract Rare Diseases", value=False)
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NER_pipeline, entity_classes
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st.
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disease_or_gard_id = st.text_input("Input a rare disease term or GARD ID.", value="Fellman syndrome")
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st.subheader("National Center for Advancing Translational Sciences (NIH/NCATS)")
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#### CHANGE SIDEBAR WIDTH ###
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st.markdown(
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"""
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<style>
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[data-testid="stSidebar"][aria-expanded="true"] > div:first-child {
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width: 275px;
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}
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[data-testid="stSidebar"][aria-expanded="false"] > div:first-child {
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width: 275px;
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margin-left: -400px;
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}
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</style>
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""",
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extract_diseases = st.sidebar.checkbox("Extract Rare Diseases", value=False)
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@st.cache(suppress_st_warning=True)
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def load_models():
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global classify_model_vars, NER_pipeline, entity_classes, GARD_dict, max_length
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with st.spinner('Loading Epidemiology Models and Dependencies...'):
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classify_model_vars = classify_abs.init_classify_model()
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NER_pipeline, entity_classes = extract_abs.init_NER_pipeline()
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GARD_dict, max_length = extract_abs.load_GARD_diseases()
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st.success('All Models and Dependencies Loaded!')
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load_models()
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disease_or_gard_id = st.text_input("Input a rare disease term or GARD ID.", value="Fellman syndrome")
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