app.py

import streamlit as st  #Web App
import os
from PIL import Image
from utils import *

import pickle
docs = None
api_key = ' '

st.set_page_config(layout="wide")

image = Image.open('arxiv_decode.png')
st.image(image, width=1000)

#title
st.title("Answering questions from scientific papers")
st.markdown("##### This tool will allow you to ask questions and get answers based on scientific papers. It uses OpenAI's GPT models, and you must have your own API key. Each query is about 10k tokens, which costs about only $0.20 on your own API key which is charged by OpenAI.")
st.markdown("##### Current version searches on [ArXiv](https://arxiv.org) papers only. 🚧Under development🚧")
st.markdown("Used libraries:\n * [PaperQA](https://github.com/whitead/paper-qa) \n* [langchain](https://github.com/hwchase17/langchain)")

api_key_url = 'https://help.openai.com/en/articles/4936850-where-do-i-find-my-secret-api-key'

api_key = st.text_input('OpenAI API Key',
         placeholder='sk-...', 
         help=f"['What is that?']({api_key_url})",
         type="password")     

os.environ["OPENAI_API_KEY"] = f"{api_key}" # 
if len(api_key) != 51:
    st.warning('Please enter a valid OpenAI API key.', icon="⚠️")


max_results_current = 5
max_results = max_results_current
def search_click_callback(search_query, max_results):
    global pdf_info, pdf_citation
    pdf_info, pdf_citation = call_arXiv_API(f'{search_query}', max_results=max_results)
    download_pdf(pdf_info)
    return pdf_info

with st.form(key='columns_in_form', clear_on_submit = False):
    c1, c2 = st.columns([8,1])
    with c1:
        search_query = st.text_input("Input search query here:", placeholder='Keywords for most relevant search...', value=''
                                       )#search_query, max_results_current))

    with c2:
        max_results = st.text_input("Max papers", value=max_results_current)
        max_results_current = max_results_current
    searchButton = st.form_submit_button(label = 'Search')

if searchButton:
    global pdf_info
    pdf_info =  search_click_callback(search_query, max_results)
    if 'pdf_info' not in st.session_state:
        st.session_state.key = 'pdf_info'
    st.session_state['pdf_info'] = pdf_info


def answer_callback(question_query):
    import paperqa
    global docs
    progress_text = "Please wait..."
    # my_bar = st.progress(0, text = progress_text)
    st.info('Please wait...', icon="🔥")
    if docs is None:
        # my_bar.progress(0.2, "Please wait...")
        pdf_info = st.session_state['pdf_info']
        # print('buliding docs')
        docs = paperqa.Docs()
        pdf_paths = [f"{p[4]}/{p[0]}.pdf" for p in pdf_info]
        pdf_citations = [p[5] for p in pdf_info]
        print(list(zip(pdf_paths, pdf_citations)))

        for d, c in zip(pdf_paths, pdf_citations):
            # print(d,c)
            docs.add(d, c)
    # docs._build_faiss_index()
    answer = docs.query(question_query)
    # print(answer.formatted_answer)
    # my_bar.progress(1.0, "Done!")
    st.success('Voila!')
    return answer.formatted_answer

form = st.form(key='question_form')
question_query = form.text_input("What do you wanna know from these papers?", placeholder='Input questions here...',
                value='')
submitButton = form.form_submit_button('Submit')

if submitButton:
    with st.expander("Found papers:", expanded=True):
        st.write(f"{st.session_state['all_reference_text']}")
    st.text_area("Answer:", answer_callback(question_query), height=600)