trial for docker unzipping
Browse files
app.py
CHANGED
@@ -1,10 +1,36 @@
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import torch
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import torch.nn.functional as F # Importing the functional module for softmax
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from torch import nn
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import gradio as gr
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import os
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# Assume model and tokenizer are already loaded
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def predict_drug_target_interaction(sentence):
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# Tokenize the input sentence
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@@ -155,4 +181,4 @@ with gr.Blocks() as demo:
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# Launch the interface
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demo.launch()
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import torch
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import torch.nn.functional as F # Importing the functional module for softmax
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from torch import nn
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import zipfile
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import gradio as gr
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from transformers import BertTokenizer, BertForSequenceClassification
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import os
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model_zip_path = "BioBERT_Model.zip"
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tokenizer_zip_path = "BioBERT_Tokenizer.zip"
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# Assume model and tokenizer are already loaded
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def load_model_and_tokenizer():
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if not os.path.exists('BioBERT_Model'):
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with zipfile.ZipFile(model_zip_path, 'r') as zip_ref:
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zip_ref.extractall('BioBERT_Model')
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if not os.path.exists('BioBERT_Tokenizer'):
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with zipfile.ZipFile(tokenizer_zip_path, 'r') as zip_ref:
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zip_ref.extractall('BioBERT_Tokenizer')
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model_path = 'BioBERT_Model/content/BioBERT_Model'
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tokenizer_path = 'BioBERT_Tokenizer/content/BioBERT_Tokenizer'
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model = BertForSequenceClassification.from_pretrained(model_path)
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tokenizer = BertTokenizer.from_pretrained(tokenizer_path)
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return model, tokenizer
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model, tokenizer = load_model_and_tokenizer()
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device = "cpu"
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model = model.to(device)
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def predict_drug_target_interaction(sentence):
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# Tokenize the input sentence
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# Launch the interface
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demo.launch()
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