Spaces:
Running
Running
Non-blocking training.
Browse files- examples/Model definition +144 -74
- examples/Model use +70 -70
- lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx +1 -0
- lynxkite-core/src/lynxkite/core/ops.py +11 -0
- lynxkite-graph-analytics/src/lynxkite_graph_analytics/core.py +10 -2
- lynxkite-graph-analytics/src/lynxkite_graph_analytics/lynxkite_ops.py +4 -0
examples/Model definition
CHANGED
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{
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"edges": [
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{
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"id": "Linear 2 Activation 1",
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"source": "Linear 2",
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"sourceHandle": "output",
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"target": "Activation 1",
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"targetHandle": "x"
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"id": "Input: tensor 1 Linear 2",
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"source": "Input: tensor 1",
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"sourceHandle": "x",
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"target": "Linear 2",
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"targetHandle": "x"
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"id": "MSE loss 2 Optimizer 2",
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"source": "MSE loss 2",
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"targetHandle": "input"
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"id": "
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"source": "Repeat 1",
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"sourceHandle": "output",
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"target": "Linear
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"targetHandle": "x"
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"type": "basic",
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"width": 232.0
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{
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"error": null,
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"input_metadata": null,
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"meta": {
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"inputs": {
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"x": {
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"name": "x",
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"position": "bottom",
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"type": {
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"type": "<class 'inspect._empty'>"
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}
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},
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"name": "Linear",
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"outputs": {
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"output": {
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"name": "output",
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"position": "top",
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"type": {
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"type": "None"
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},
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"params": {
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"output_dim": {
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"default": "",
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"name": "output_dim",
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"type": {
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"type": "<class 'int'>"
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}
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},
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"type": "basic"
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},
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"params": {
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"output_dim": "4"
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},
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"status": "planned",
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"title": "Linear"
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},
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"dragHandle": ".bg-primary",
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"height": 200.0,
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"id": "Linear 2",
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"position": {
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"x": 92.32755761444682,
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"y": 20.626371289630676
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},
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"type": "basic",
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"width": 200.0
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},
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{
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"data": {
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"__execution_delay": 0.0,
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"inputs": {},
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"name": "Input: tensor",
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"outputs": {
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"
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"name": "
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"position": "top",
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"type": {
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"type": "tensor"
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"inputs": {},
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"name": "Input: tensor",
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"outputs": {
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"name": "
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"position": "top",
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"type": {
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"type": "tensor"
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},
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"type": "basic",
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"width": 200.0
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}
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}
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{
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"edges": [
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{
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"id": "MSE loss 2 Optimizer 2",
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"source": "MSE loss 2",
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"targetHandle": "input"
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},
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{
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"id": "Input: tensor 1 Linear 1",
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"source": "Input: tensor 1",
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"sourceHandle": "x",
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"target": "Linear 1",
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"targetHandle": "x"
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},
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{
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"id": "Linear 1 Activation 1",
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"source": "Linear 1",
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"sourceHandle": "output",
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"target": "Activation 1",
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"targetHandle": "x"
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},
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{
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"id": "Repeat 1 Linear 1",
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"source": "Repeat 1",
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"sourceHandle": "output",
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"target": "Linear 1",
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"targetHandle": "x"
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}
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],
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"type": "basic",
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"width": 232.0
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},
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{
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"data": {
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"__execution_delay": 0.0,
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"inputs": {},
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"name": "Input: tensor",
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"outputs": {
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"x": {
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"name": "x",
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"position": "top",
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"type": {
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"type": "tensor"
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"inputs": {},
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"name": "Input: tensor",
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"outputs": {
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"x": {
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"name": "x",
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"position": "top",
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"type": {
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"type": "tensor"
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},
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"type": "basic",
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"width": 200.0
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},
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{
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"meta": {
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"inputs": {
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"input": {
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"name": "input",
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"position": "top",
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"type": {
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"type": "tensor"
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}
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}
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},
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"name": "Repeat",
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"outputs": {
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"output": {
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"name": "output",
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"position": "bottom",
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"type": {
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"type": "tensor"
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}
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}
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},
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"params": {
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"same_weights": {
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"default": false,
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"name": "same_weights",
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"type": {
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"type": "<class 'bool'>"
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}
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},
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"times": {
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"default": 1.0,
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"name": "times",
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"type": {
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"type": "<class 'int'>"
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}
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}
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},
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"position": {
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"x": 487.0,
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"y": 443.0
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},
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"type": "basic"
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},
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"params": {
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"same_weights": false,
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"times": "2"
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},
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"status": "planned",
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"title": "Repeat"
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},
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"dragHandle": ".bg-primary",
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"height": 200.0,
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"id": "Repeat 1",
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"position": {
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"x": -210.0,
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"y": -135.0
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},
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"type": "basic",
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"width": 200.0
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},
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{
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"data": {
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"meta": {
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"inputs": {
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"x": {
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"name": "x",
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"position": "bottom",
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"type": {
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"type": "<class 'inspect._empty'>"
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}
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}
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},
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"name": "Linear",
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"outputs": {
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"output": {
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"name": "output",
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"position": "top",
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"type": {
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"type": "None"
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}
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}
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},
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"params": {
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"default": 1024.0,
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},
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},
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"output_dim": "4"
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},
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"status": "planned",
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"title": "Linear"
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},
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"dragHandle": ".bg-primary",
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"height": 200.0,
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"id": "Linear 1",
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}
|
examples/Model use
CHANGED
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"columns": [
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"x",
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"y",
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"data": [
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},
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"[1.48959708 1.48549271 1.32688856 1.35667706]"
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],
|
| 699 |
[
|
| 700 |
-
"[0.
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| 701 |
-
"[1.
|
| 702 |
],
|
| 703 |
[
|
| 704 |
"[0.40167677 0.25953674 0.9407078 0.76308483]",
|
|
@@ -736,10 +736,6 @@
|
|
| 736 |
"[0.68062544 0.98093534 0.14778823 0.53244978]",
|
| 737 |
"[1.68062544 1.98093534 1.14778829 1.53244972]"
|
| 738 |
],
|
| 739 |
-
[
|
| 740 |
-
"[0.31518555 0.49643308 0.11509258 0.95458382]",
|
| 741 |
-
"[1.31518555 1.49643302 1.11509252 1.95458388]"
|
| 742 |
-
],
|
| 743 |
[
|
| 744 |
"[0.79121011 0.54161114 0.69369799 0.1520769 ]",
|
| 745 |
"[1.79121017 1.54161119 1.69369793 1.15207696]"
|
|
@@ -753,8 +749,8 @@
|
|
| 753 |
"[1.23942459 1.90487361 1.69337189 1.65089428]"
|
| 754 |
],
|
| 755 |
[
|
| 756 |
-
"[0.
|
| 757 |
-
"[1.
|
| 758 |
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|
| 759 |
[
|
| 760 |
"[0.30754459 0.77694583 0.09278506 0.38326019]",
|
|
@@ -780,6 +776,10 @@
|
|
| 780 |
"[0.78956431 0.87284744 0.06880784 0.03455889]",
|
| 781 |
"[1.78956437 1.87284744 1.06880784 1.03455889]"
|
| 782 |
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|
| 783 |
[
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| 784 |
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|
| 785 |
"[1.00497234 1.39319336 1.57054162 1.75150967]"
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|
@@ -845,16 +845,8 @@
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|
| 845 |
"[1.95928192 1.84273899 1.7151463 1.38619852]"
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| 846 |
],
|
| 847 |
[
|
| 848 |
-
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|
| 853 |
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| 856 |
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| 857 |
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"[1.79905868 1.89367437 1.75429082 1.3190186 ]"
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| 858 |
],
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| 859 |
[
|
| 860 |
"[0.67418337 0.79634351 0.23229051 0.71345252]",
|
|
@@ -869,12 +861,12 @@
|
|
| 869 |
"[1.81788456 1.58174157 1.29376316 1.79712534]"
|
| 870 |
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| 871 |
[
|
| 872 |
-
"[0.
|
| 873 |
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"[1.
|
| 874 |
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|
| 875 |
[
|
| 876 |
-
"[0.
|
| 877 |
-
"[1.
|
| 878 |
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|
| 879 |
[
|
| 880 |
"[0.02162331 0.81861657 0.92468154 0.07808572]",
|
|
@@ -904,6 +896,10 @@
|
|
| 904 |
"[0.60609657 0.96257663 0.19292736 0.95702219]",
|
| 905 |
"[1.60609651 1.96257663 1.19292736 1.95702219]"
|
| 906 |
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|
|
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|
|
| 907 |
[
|
| 908 |
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|
| 909 |
"[1.70167565 1.26930213 1.56606746 1.61194968]"
|
|
@@ -912,6 +908,10 @@
|
|
| 912 |
"[0.76933283 0.86241865 0.44114518 0.65644735]",
|
| 913 |
"[1.76933289 1.86241865 1.44114518 1.65644741]"
|
| 914 |
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|
| 915 |
[
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| 916 |
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|
| 917 |
"[1.15064228 1.03198934 1.25754833 1.51484001]"
|
|
@@ -949,13 +949,17 @@
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|
| 949 |
"[1.40234613 1.54987347 1.49542785 1.5415318 ]"
|
| 950 |
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| 951 |
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| 952 |
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| 955 |
[
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| 956 |
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|
| 957 |
"[1.72470164 1.49403214 1.41027355 1.89364016]"
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| 958 |
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|
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|
|
| 959 |
[
|
| 960 |
"[0.49584109 0.80599248 0.07096875 0.75872749]",
|
| 961 |
"[1.49584103 1.80599248 1.07096875 1.75872755]"
|
|
@@ -976,10 +980,6 @@
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|
| 976 |
"[0.68094063 0.45189077 0.22661722 0.37354094]",
|
| 977 |
"[1.68094063 1.45189071 1.22661722 1.37354088]"
|
| 978 |
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|
| 979 |
-
[
|
| 980 |
-
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|
| 981 |
-
"[1.43681622 1.74680805 1.83598757 1.12414408]"
|
| 982 |
-
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| 983 |
[
|
| 984 |
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|
| 985 |
"[1.47870922 1.17129111 1.27300501 1.20634604]"
|
|
@@ -1000,7 +1000,7 @@
|
|
| 1000 |
}
|
| 1001 |
},
|
| 1002 |
"other": {
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| 1003 |
-
"model": "ModelConfig(model=Sequential(\n (0) - Identity(): Input__tensor_1_x -> START_Repeat_1_output\n (1) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output ->
|
| 1004 |
},
|
| 1005 |
"relations": []
|
| 1006 |
},
|
|
@@ -1016,7 +1016,7 @@
|
|
| 1016 |
},
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| 1017 |
"df_test": {
|
| 1018 |
"columns": [
|
| 1019 |
-
"
|
| 1020 |
"x",
|
| 1021 |
"y"
|
| 1022 |
]
|
|
@@ -1035,8 +1035,8 @@
|
|
| 1035 |
"Input__tensor_1_x"
|
| 1036 |
],
|
| 1037 |
"loss_inputs": [
|
| 1038 |
-
"
|
| 1039 |
-
"
|
| 1040 |
],
|
| 1041 |
"outputs": [
|
| 1042 |
"END_Repeat_1_output"
|
|
@@ -1210,8 +1210,8 @@
|
|
| 1210 |
"Input__tensor_1_x"
|
| 1211 |
],
|
| 1212 |
"loss_inputs": [
|
| 1213 |
-
"
|
| 1214 |
-
"
|
| 1215 |
],
|
| 1216 |
"outputs": [
|
| 1217 |
"END_Repeat_1_output"
|
|
@@ -1270,7 +1270,7 @@
|
|
| 1270 |
"type": "basic"
|
| 1271 |
},
|
| 1272 |
"params": {
|
| 1273 |
-
"epochs": "
|
| 1274 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_train\",\"column\":\"x\"},\"Input__tensor_3_x\":{\"df\":\"df_train\",\"column\":\"y\"}}}",
|
| 1275 |
"model_name": "model"
|
| 1276 |
},
|
|
@@ -1322,8 +1322,8 @@
|
|
| 1322 |
"Input__tensor_1_x"
|
| 1323 |
],
|
| 1324 |
"loss_inputs": [
|
| 1325 |
-
"
|
| 1326 |
-
"
|
| 1327 |
],
|
| 1328 |
"outputs": [
|
| 1329 |
"END_Repeat_1_output"
|
|
@@ -1384,13 +1384,13 @@
|
|
| 1384 |
"params": {
|
| 1385 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_test\",\"column\":\"x\"}}}",
|
| 1386 |
"model_name": "model",
|
| 1387 |
-
"output_mapping": "{\"map\":{\"END_Repeat_1_output\":{\"df\":\"df_test\",\"column\":\"
|
| 1388 |
},
|
| 1389 |
"status": "done",
|
| 1390 |
"title": "Model inference"
|
| 1391 |
},
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| 1392 |
"dragHandle": ".bg-primary",
|
| 1393 |
-
"height":
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| 1394 |
"id": "Model inference 1",
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"x": 2181.718373860645,
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|
|
|
| 575 |
"columns": [
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| 576 |
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| 577 |
"y",
|
| 578 |
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| 579 |
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| 580 |
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| 1003 |
+
"model": "ModelConfig(model=Sequential(\n (0) - Identity(): Input__tensor_1_x -> START_Repeat_1_output\n (1) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output -> Linear_1_output\n (2) - <function leaky_relu at 0x762d1f82c680>: Linear_1_output -> Activation_1_output\n (3) - Identity(): Activation_1_output -> START_Repeat_1_output\n (4) - Linear(in_features=4, out_features=4, bias=True): START_Repeat_1_output -> Linear_1_output\n (5) - <function leaky_relu at 0x762d1f82c680>: Linear_1_output -> Activation_1_output\n (6) - Identity(): Activation_1_output -> END_Repeat_1_output\n (7) - Identity(): END_Repeat_1_output -> END_Repeat_1_output\n), model_inputs=['Input__tensor_1_x'], model_outputs=['END_Repeat_1_output'], loss_inputs=['END_Repeat_1_output', 'Input__tensor_3_x'], loss=Sequential(\n (0) - <function mse_loss at 0x762d1f82e160>: END_Repeat_1_output, Input__tensor_3_x -> MSE_loss_2_output\n (1) - Identity(): MSE_loss_2_output -> loss\n), optimizer_parameters={'lr': 0.1, 'type': <OptionsFor_type.SGD: 4>}, optimizer=SGD (\nParameter Group 0\n dampening: 0\n differentiable: False\n foreach: None\n fused: None\n lr: 0.1\n maximize: False\n momentum: 0\n nesterov: False\n weight_decay: 0\n), source_workspace='Model definition', trained=True)"
|
| 1004 |
},
|
| 1005 |
"relations": []
|
| 1006 |
},
|
|
|
|
| 1016 |
},
|
| 1017 |
"df_test": {
|
| 1018 |
"columns": [
|
| 1019 |
+
"pred",
|
| 1020 |
"x",
|
| 1021 |
"y"
|
| 1022 |
]
|
|
|
|
| 1035 |
"Input__tensor_1_x"
|
| 1036 |
],
|
| 1037 |
"loss_inputs": [
|
| 1038 |
+
"END_Repeat_1_output",
|
| 1039 |
+
"Input__tensor_3_x"
|
| 1040 |
],
|
| 1041 |
"outputs": [
|
| 1042 |
"END_Repeat_1_output"
|
|
|
|
| 1210 |
"Input__tensor_1_x"
|
| 1211 |
],
|
| 1212 |
"loss_inputs": [
|
| 1213 |
+
"END_Repeat_1_output",
|
| 1214 |
+
"Input__tensor_3_x"
|
| 1215 |
],
|
| 1216 |
"outputs": [
|
| 1217 |
"END_Repeat_1_output"
|
|
|
|
| 1270 |
"type": "basic"
|
| 1271 |
},
|
| 1272 |
"params": {
|
| 1273 |
+
"epochs": "1003",
|
| 1274 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_train\",\"column\":\"x\"},\"Input__tensor_3_x\":{\"df\":\"df_train\",\"column\":\"y\"}}}",
|
| 1275 |
"model_name": "model"
|
| 1276 |
},
|
|
|
|
| 1322 |
"Input__tensor_1_x"
|
| 1323 |
],
|
| 1324 |
"loss_inputs": [
|
| 1325 |
+
"END_Repeat_1_output",
|
| 1326 |
+
"Input__tensor_3_x"
|
| 1327 |
],
|
| 1328 |
"outputs": [
|
| 1329 |
"END_Repeat_1_output"
|
|
|
|
| 1384 |
"params": {
|
| 1385 |
"input_mapping": "{\"map\":{\"Input__tensor_1_x\":{\"df\":\"df_test\",\"column\":\"x\"}}}",
|
| 1386 |
"model_name": "model",
|
| 1387 |
+
"output_mapping": "{\"map\":{\"END_Repeat_1_output\":{\"df\":\"df_test\",\"column\":\"pred\"}}}"
|
| 1388 |
},
|
| 1389 |
"status": "done",
|
| 1390 |
"title": "Model inference"
|
| 1391 |
},
|
| 1392 |
"dragHandle": ".bg-primary",
|
| 1393 |
+
"height": 650.0,
|
| 1394 |
"id": "Model inference 1",
|
| 1395 |
"position": {
|
| 1396 |
"x": 2181.718373860645,
|
lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx
CHANGED
|
@@ -91,6 +91,7 @@ function ModelMapping({ value, onChange, data, variant }: any) {
|
|
| 91 |
const dfs: { [df: string]: string[] } = {};
|
| 92 |
const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? [];
|
| 93 |
for (const input of inputs) {
|
|
|
|
| 94 |
const dataframes = input.dataframes as {
|
| 95 |
[df: string]: { columns: string[] };
|
| 96 |
};
|
|
|
|
| 91 |
const dfs: { [df: string]: string[] } = {};
|
| 92 |
const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? [];
|
| 93 |
for (const input of inputs) {
|
| 94 |
+
if (!input.dataframes) continue;
|
| 95 |
const dataframes = input.dataframes as {
|
| 96 |
[df: string]: { columns: string[] };
|
| 97 |
};
|
lynxkite-core/src/lynxkite/core/ops.py
CHANGED
|
@@ -1,6 +1,7 @@
|
|
| 1 |
"""API for implementing LynxKite operations."""
|
| 2 |
|
| 3 |
from __future__ import annotations
|
|
|
|
| 4 |
import enum
|
| 5 |
import functools
|
| 6 |
import inspect
|
|
@@ -297,3 +298,13 @@ def op_registration(env: str):
|
|
| 297 |
def passive_op_registration(env: str):
|
| 298 |
"""Returns a function that can be used to register operations without associated code."""
|
| 299 |
return functools.partial(register_passive_op, env)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
"""API for implementing LynxKite operations."""
|
| 2 |
|
| 3 |
from __future__ import annotations
|
| 4 |
+
import asyncio
|
| 5 |
import enum
|
| 6 |
import functools
|
| 7 |
import inspect
|
|
|
|
| 298 |
def passive_op_registration(env: str):
|
| 299 |
"""Returns a function that can be used to register operations without associated code."""
|
| 300 |
return functools.partial(register_passive_op, env)
|
| 301 |
+
|
| 302 |
+
|
| 303 |
+
def slow(func):
|
| 304 |
+
"""Decorator for slow, blocking operations. Turns them into separate threads."""
|
| 305 |
+
|
| 306 |
+
@functools.wraps(func)
|
| 307 |
+
async def wrapper(*args, **kwargs):
|
| 308 |
+
return await asyncio.to_thread(func, *args, **kwargs)
|
| 309 |
+
|
| 310 |
+
return wrapper
|
lynxkite-graph-analytics/src/lynxkite_graph_analytics/core.py
CHANGED
|
@@ -1,5 +1,6 @@
|
|
| 1 |
"""Graph analytics executor and data types."""
|
| 2 |
|
|
|
|
| 3 |
import os
|
| 4 |
from lynxkite.core import ops, workspace
|
| 5 |
import dataclasses
|
|
@@ -177,10 +178,16 @@ async def execute(ws: workspace.Workspace):
|
|
| 177 |
# All inputs for this node are ready, we can compute the output.
|
| 178 |
todo.remove(id)
|
| 179 |
progress = True
|
| 180 |
-
_execute_node(node, ws, catalog, outputs)
|
| 181 |
|
| 182 |
|
| 183 |
-
def
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 184 |
params = {**node.data.params}
|
| 185 |
op = catalog.get(node.data.title)
|
| 186 |
if not op:
|
|
@@ -214,6 +221,7 @@ def _execute_node(node, ws, catalog, outputs):
|
|
| 214 |
# Execute op.
|
| 215 |
try:
|
| 216 |
result = op(*inputs, **params)
|
|
|
|
| 217 |
except Exception as e:
|
| 218 |
if os.environ.get("LYNXKITE_LOG_OP_ERRORS"):
|
| 219 |
traceback.print_exc()
|
|
|
|
| 1 |
"""Graph analytics executor and data types."""
|
| 2 |
|
| 3 |
+
import inspect
|
| 4 |
import os
|
| 5 |
from lynxkite.core import ops, workspace
|
| 6 |
import dataclasses
|
|
|
|
| 178 |
# All inputs for this node are ready, we can compute the output.
|
| 179 |
todo.remove(id)
|
| 180 |
progress = True
|
| 181 |
+
await _execute_node(node, ws, catalog, outputs)
|
| 182 |
|
| 183 |
|
| 184 |
+
async def await_if_needed(obj):
|
| 185 |
+
if inspect.isawaitable(obj):
|
| 186 |
+
obj = await obj
|
| 187 |
+
return obj
|
| 188 |
+
|
| 189 |
+
|
| 190 |
+
async def _execute_node(node, ws, catalog, outputs):
|
| 191 |
params = {**node.data.params}
|
| 192 |
op = catalog.get(node.data.title)
|
| 193 |
if not op:
|
|
|
|
| 221 |
# Execute op.
|
| 222 |
try:
|
| 223 |
result = op(*inputs, **params)
|
| 224 |
+
result.output = await await_if_needed(result.output)
|
| 225 |
except Exception as e:
|
| 226 |
if os.environ.get("LYNXKITE_LOG_OP_ERRORS"):
|
| 227 |
traceback.print_exc()
|
lynxkite-graph-analytics/src/lynxkite_graph_analytics/lynxkite_ops.py
CHANGED
|
@@ -369,6 +369,7 @@ class ModelOutputMapping(pytorch_model_ops.ModelMapping):
|
|
| 369 |
|
| 370 |
|
| 371 |
@op("Train model")
|
|
|
|
| 372 |
def train_model(
|
| 373 |
bundle: core.Bundle,
|
| 374 |
*,
|
|
@@ -380,9 +381,11 @@ def train_model(
|
|
| 380 |
m = bundle.other[model_name].copy()
|
| 381 |
inputs = pytorch_model_ops.to_tensors(bundle, input_mapping)
|
| 382 |
t = tqdm(range(epochs), desc="Training model")
|
|
|
|
| 383 |
for _ in t:
|
| 384 |
loss = m.train(inputs)
|
| 385 |
t.set_postfix({"loss": loss})
|
|
|
|
| 386 |
m.trained = True
|
| 387 |
bundle = bundle.copy()
|
| 388 |
bundle.other[model_name] = m
|
|
@@ -390,6 +393,7 @@ def train_model(
|
|
| 390 |
|
| 391 |
|
| 392 |
@op("Model inference")
|
|
|
|
| 393 |
def model_inference(
|
| 394 |
bundle: core.Bundle,
|
| 395 |
*,
|
|
|
|
| 369 |
|
| 370 |
|
| 371 |
@op("Train model")
|
| 372 |
+
@ops.slow
|
| 373 |
def train_model(
|
| 374 |
bundle: core.Bundle,
|
| 375 |
*,
|
|
|
|
| 381 |
m = bundle.other[model_name].copy()
|
| 382 |
inputs = pytorch_model_ops.to_tensors(bundle, input_mapping)
|
| 383 |
t = tqdm(range(epochs), desc="Training model")
|
| 384 |
+
losses = []
|
| 385 |
for _ in t:
|
| 386 |
loss = m.train(inputs)
|
| 387 |
t.set_postfix({"loss": loss})
|
| 388 |
+
losses.append(loss)
|
| 389 |
m.trained = True
|
| 390 |
bundle = bundle.copy()
|
| 391 |
bundle.other[model_name] = m
|
|
|
|
| 393 |
|
| 394 |
|
| 395 |
@op("Model inference")
|
| 396 |
+
@ops.slow
|
| 397 |
def model_inference(
|
| 398 |
bundle: core.Bundle,
|
| 399 |
*,
|