Merge pull request #90 from biggraph/darabos-bionemo

lynxkite-graph-analytics/Dockerfile.bionemo

@@ -15,3 +15,7 @@ RUN uv pip install -e lynxkite-core/[dev] -e lynxkite-app/[dev] -e lynxkite-grap
 
 # bionemo cellxgene_census needs this version of numpy
 RUN uv pip install numpy==1.26.4
+
+ENV LYNXKITE_DATA=examples
+
+CMD ["lynxkite"]

lynxkite-graph-analytics/README.md

@@ -28,13 +28,12 @@ To build the image:
 ```bash
 # in lynxkite-graph-analytics folder
 $ docker build -f Dockerfile.bionemo -t lynxkite-bionemo ..
+$ docker run --name bionemo -d -p8000:8000 --gpus=all lynxkite-bionemo
 ```
 
 Take into account that this Dockerfile does not include the lynxkite-lynxscribe package. If you want to include it you will
 need to set up git credentials inside the container.
 
-Then, inside the image you can start LynxKite as usual.
-
 If you want to do some development, then it is recommend to use the [devcontainers](https://code.visualstudio.com/docs/devcontainers/containers)
 vscode extension. The following is a basic configuration to get started: