lynxkite-graph-analytics/Dockerfile.bionemo

FROM nvcr.io/nvidia/clara/bionemo-framework:nightly

ENV LYNXKITE_BIONEMO_INSTALLED=true

WORKDIR /app

# Download and install nvm
RUN curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.2/install.sh |  bash
RUN echo node > .nvmrc
RUN source /root/.nvm/nvm.sh --install

COPY . /app

RUN uv pip install -e lynxkite-core/[dev] -e lynxkite-app/[dev] -e lynxkite-graph-analytics/[dev] -e lynxkite-bio  -e lynxkite-pillow-example/

# bionemo cellxgene_census needs this version of numpy
RUN uv pip install numpy==1.26.4

ENV LYNXKITE_DATA=examples

CMD ["lynxkite"]