lkjjj26 commited on
Commit
52245fc
·
1 Parent(s): 7d9ca7e

update simlar example

Browse files
Files changed (1) hide show
  1. app.py +4 -4
app.py CHANGED
@@ -1,6 +1,6 @@
1
  from transformers import pipeline
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- from rcsbsearchapi import TextQuery, AttributeQuery, Query
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- from rcsbsearchapi.search import Sort, SequenceQuery
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  import os
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  from dotenv import load_dotenv
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  from shiny import App, render, ui, reactive
@@ -11,7 +11,7 @@ import re
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  import plotly.graph_objects as go
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  from shinywidgets import output_widget, render_widget
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  import requests
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- import asyncio
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  from Bio import PDB
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  from Bio.PDB.PDBList import PDBList
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  from Bio.PDB.Polypeptide import protein_letters_3to1
@@ -1011,7 +1011,7 @@ app_ui = ui.page_fluid(
1011
  ui.p("Example queries:"),
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  ui.tags.ul(
1013
  ui.tags.li("Human hemoglobin C resolution better than 2.5Å"),
1014
- ui.tags.li("Find structures containing sequence with similarity 90% MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL"),
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  ui.tags.li("Sequence of PDB ID 8ET6"),
1016
  )
1017
  )
 
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  from transformers import pipeline
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+ from rcsbsearchapi import AttributeQuery
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+ from rcsbsearchapi.search import SequenceQuery
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  import os
5
  from dotenv import load_dotenv
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  from shiny import App, render, ui, reactive
 
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  import plotly.graph_objects as go
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  from shinywidgets import output_widget, render_widget
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  import requests
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+ # import asyncio
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  from Bio import PDB
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  from Bio.PDB.PDBList import PDBList
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  from Bio.PDB.Polypeptide import protein_letters_3to1
 
1011
  ui.p("Example queries:"),
1012
  ui.tags.ul(
1013
  ui.tags.li("Human hemoglobin C resolution better than 2.5Å"),
1014
+ ui.tags.li("Find structures containing sequence with similarity 90% FVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAEDLQVGQVELGGGPGAGSLQPLALEGSLQKR"),
1015
  ui.tags.li("Sequence of PDB ID 8ET6"),
1016
  )
1017
  )