diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000000000000000000000000000000000000..60ebab26ee6f9f599d7c523df5286dbae27c27f4
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,63 @@
+FROM ubuntu:latest
+
+RUN apt-get update
+RUN apt-get install python3 python3-pip -y
+# FROM ubuntu:22.04
+
+# RUN apt update
+# RUN apt-get update
+# RUN apt install python3.10 python3-pip -y
+
+# https://stackoverflow.com/questions/75608323/how-do-i-solve-error-externally-managed-environment-every-time-i-use-pip-3
+# https://veronneau.org/python-311-pip-and-breaking-system-packages.html
+ENV PIP_BREAK_SYSTEM_PACKAGES 1
+
+
+##################################################
+# Ubuntu setup
+##################################################
+
+RUN apt-get update \
+ && apt-get install -y wget \
+ && rm -rf /var/lib/apt/lists/*
+
+RUN apt-get update && apt-get -y upgrade \
+ && apt-get install -y --no-install-recommends \
+ unzip \
+ nano \
+ git \
+ g++ \
+ gcc \
+ htop \
+ zip \
+ ca-certificates \
+ && rm -rf /var/lib/apt/lists/*
+
+##################################################
+# ODTP setup
+##################################################
+
+# Set up a new user named "user" with user ID 1000
+#RUN useradd -m -u 1000 user
+
+# Switch to the "user" user
+USER 1000
+
+# Set home to the user's home directory
+ENV HOME=/home/user \
+ PATH=/home/user/.local/bin:$PATH
+
+# Set the working directory to the user's home directory
+WORKDIR $HOME/digiwild
+
+# Try and run pip command after setting the user with `USER user` to avoid permission issues with Python
+RUN pip install --no-cache-dir --upgrade pip
+
+# Copy the current directory contents into the container at $HOME/app setting the owner to the user
+COPY --chown=1000:1000 . $HOME/digiwild
+
+RUN pip3 install -r $HOME/digiwild/requirements.txt
+
+#RUN chown -R user:user /digiwild/data /digiwild/app/assets
+
+ENTRYPOINT ["python3", "/home/user/digiwild/app/main.py"]
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000000000000000000000000000000000000..0ad25db4bd1d86c452db3f9602ccdbe172438f52
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,661 @@
+ GNU AFFERO GENERAL PUBLIC LICENSE
+ Version 3, 19 November 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The GNU Affero General Public License is a free, copyleft license for
+software and other kinds of works, specifically designed to ensure
+cooperation with the community in the case of network server software.
+
+ The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+our General Public Licenses are intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+ Developers that use our General Public Licenses protect your rights
+with two steps: (1) assert copyright on the software, and (2) offer
+you this License which gives you legal permission to copy, distribute
+and/or modify the software.
+
+ A secondary benefit of defending all users' freedom is that
+improvements made in alternate versions of the program, if they
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+users of that server. Therefore, public use of a modified version, on
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+
+ An older license, called the Affero General Public License and
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+address new problems or concerns.
+
+ Each version is given a distinguishing version number. If the
+Program specifies that a certain numbered version of the GNU Affero General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU Affero General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+ If the Program specifies that a proxy can decide which future
+versions of the GNU Affero General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+ Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+ 15. Disclaimer of Warranty.
+
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as published
+ by the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Affero General Public License for more details.
+
+ You should have received a copy of the GNU Affero General Public License
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If your software can interact with users remotely through a computer
+network, you should also make sure that it provides a way for users to
+get its source. For example, if your program is a web application, its
+interface could display a "Source" link that leads users to an archive
+of the code. There are many ways you could offer source, and different
+solutions will be better for different programs; see section 13 for the
+specific requirements.
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU AGPL, see
+<https://www.gnu.org/licenses/>.
diff --git a/app/.DS_Store b/app/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..fbafeea98564ef9a71432e0e3ed8fdcbc07f2c36
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diff --git a/app/.env.dist b/app/.env.dist
new file mode 100644
index 0000000000000000000000000000000000000000..aab89b466c36b9c6fdd50b3821a6623f79841a16
--- /dev/null
+++ b/app/.env.dist
@@ -0,0 +1 @@
+PATH_ASSETS="YOUR_PATH_HERE"
\ No newline at end of file
diff --git a/app/__init__.py b/app/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/app/__pycache__/__init__.cpython-312.pyc b/app/__pycache__/__init__.cpython-312.pyc
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diff --git a/app/__pycache__/wounded.cpython-312.pyc b/app/__pycache__/wounded.cpython-312.pyc
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diff --git a/app/assets/.DS_Store b/app/assets/.DS_Store
new file mode 100644
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diff --git a/app/assets/config/config_checkbox_behavior.json b/app/assets/config/config_checkbox_behavior.json
new file mode 100644
index 0000000000000000000000000000000000000000..73ebacfba6ea4871668d3fc191737a3d821ba179
--- /dev/null
+++ b/app/assets/config/config_checkbox_behavior.json
@@ -0,0 +1,42 @@
+{
+ "Abnormal breathing":
+ {
+ "Description": "Problems breathing, breathing sounds"
+ },
+ "Crash, Falling from the sky":
+ {
+ "Description": "Suddenly falling from the sky"
+ },
+ "Diarrhea":
+ {
+ "Description": "Observed diarrhea"
+ },
+ "Lameness":
+ {
+ "Description": "Apparent limping or not able to walk properly"
+ },
+ "Neurological":
+ {
+ "Description": "Circling, incoordination, tremors, convulsions, fast eye movements"
+ },
+ "Other abnormal behavior":
+ {
+ "Description": "Other than weakness, other than neurologic"
+ },
+ "Unable to fly":
+ {
+ "Description": "Animal alert and tries to fly but can not take off"
+ },
+ "Vomiting":
+ {
+ "Description": "Throwing up undigested food, regurgitating"
+ },
+ "Weakness":
+ {
+ "Description": "Non responsive, does not fly away when approached, lethargy"
+ },
+ "No changes":
+ {
+ "Description": "Animal is acting normally"
+ }
+}
\ No newline at end of file
diff --git a/app/assets/config/config_checkbox_physical.json b/app/assets/config/config_checkbox_physical.json
new file mode 100644
index 0000000000000000000000000000000000000000..5533d751f665af16c13b261d2c289c4483f74230
--- /dev/null
+++ b/app/assets/config/config_checkbox_physical.json
@@ -0,0 +1,68 @@
+{
+ "Common":
+ {
+ "Blackened/burnt skin": {
+ "Description": "Burnt/ blackened/ charred skin or feathers"},
+ "Blood": {
+ "Description": "Visible blood"},
+ "Foreign body": {
+ "Description": "Objects in feathers"},
+ "Fracture": {
+ "Description": "Obvious bone fracture"},
+ "Injury": {
+ "Description": "Visible skin injury"},
+ "Parasite": {
+ "Description": "Maggots, fleas, lice, louseflies"},
+ "Swelling": {
+ "Description": "Marked swelling without injury"},
+ "Warty or tumor-like growth, crusts": {
+ "Description": "Unusual growth, crusty tumor-like growth"}
+ },
+ "Beak":
+ {
+ "Adhesion": {
+ "Description": "Material (food, saliva) around/ in the beak"
+ },
+ "Deformation": {
+ "Description": "Unusual beak growth"
+ }
+ },
+ "Body":
+ {
+ "Emaciation": {
+ "Description": "Breast muscles are not well developed"},
+ "Fluffed up": {
+ "Description": "Plumage is fluffed up"},
+ "Stained feathers": {
+ "Description": "Feces, dirt, dried blood"}
+ },
+ "Feathers/Wings/Tail":
+ {
+ "Fluffed up": {
+ "Description": "Plumage is fluffed up"},
+ "Feather abnormalities": {
+ "Description": "Discoloration, broken/ missing feathers"},
+ "Stained feathers": {
+ "Description": "Feces, dirt, dried blood"},
+ "Abnormal wing posture": {
+ "Description": "Wing is not used/ hangs on the side"},
+ "Missing limb": {
+ "Description": "Missing limb"}
+ },
+ "Head incl. eyes":
+ {
+ "Ear changes": {
+ "Description": "Swollen, crusts, plugged, discharge"},
+ "Eye changes": {
+ "Description": "Red, swollen, discharge, crusts, eyes shut"},
+ "Tilted head": {
+ "Description": "Wry neck, unusual neck posture, torticollis"}
+ },
+ "Legs":
+ {
+ "Missing limb": {
+ "Description": "Missing limb"},
+ "Deformation": {
+ "Description": "Abnormal form of limbs, toes, legs"}
+ }
+}
diff --git a/app/assets/config/config_dropdown_circumstances.json b/app/assets/config/config_dropdown_circumstances.json
new file mode 100644
index 0000000000000000000000000000000000000000..8cdf696d322431d5c09d53c205b7245f60760043
--- /dev/null
+++ b/app/assets/config/config_dropdown_circumstances.json
@@ -0,0 +1,138 @@
+{
+ "Collision with a means of transport":
+ {
+ "road vehicle":
+ {
+ "Options": {
+ "road_type" : ["highway", "main road", "secondary road", "local road/path/trail", "parking lot", "other road", "unknown road"]
+ },
+ "Open": "Infrastructure_number"
+ },
+ "train":
+ {
+ "Open": "Infrastructure_number"
+ },
+ "aircraft": {},
+ "boat": {},
+ "other transport collision": {},
+ "unknown": {}
+ },
+ "Destruction / Deliberatly removed" :
+ {
+ "hunting":
+ {
+ "Options": {
+ "method" : ["shooting", "bow", "falconry",
+ "hounds hunting", "digging up", "other hunting", "unknow hunting"]
+ }
+ },
+ "trap":
+ {
+ "Options": {
+ "method": ["killing trap", "pole trap",
+ "trap cage", "corvids nasse", "net", "cage trap",
+ "fall-trap", "glue trap", "insect trap", "other trap", "unknown trap"]
+ }
+ },
+ "poisoning": {},
+ "removal or direct capture":
+ {
+ "Options": {"method": ["gassing", "raptor captured at nest",
+ "brood destruction", "traffic/trade", "capture accident",
+ "scientific sample", "other removal", "unknown removal"]
+ }
+ },
+ "fishing":
+ {
+ "Options": {"method" : ["drowned/tangled", "beached with capture indications",
+ "other fishing", "unknown fishing"]
+ }
+ },
+ "other destruction": {},
+ "unknown": {}
+ },
+ "Indirect destruction":
+ {
+ "pylone and electric grid":
+ {
+
+ "Options": {
+ "infrastructure" : ["electric line", "pole/pylon", "other structure", "unknown structure"]
+ },
+ "Extra":
+ {
+ "Cause": ["collision", "electrocution"]
+ }
+ },
+ "windfarm": {},
+ "other collision":
+ {
+ "Options": {
+ "object": ["window", "building", "lighthouse", "cable", "wire fence/barbed wire", "other crash", "unknown crash"]
+ }
+ },
+ "fall":
+ {
+ "Options": {
+ "location": ["chimney", "empty pole", "hole/well", "other fall", "unknown fall"]
+ }
+ },
+ "development work":
+ {
+ "Options": {
+ "work_type" : ["transport infrastructure", "building", "other work", "unknown work"]
+ }
+ },
+ "pollution / contamination":
+ {
+ "Options": {
+ "pollution_type" : ["oil pollution", "chemical pollution", "heavy metals",
+ "light", "noise", "plastic ingestion", "other pollution", "unknown pollution"]
+ },
+ "agricultural net protection": {},
+ "vegetal / forest work":
+ {
+ "Options": {
+ "work_type" : ["clearing/mowing/plowing", "tree felling/pruning",
+ "other forest work", "unknown forest work"]
+ }
+ }
+ },
+ "other indirect destruction": {},
+ "unknown": {}
+ },
+ "Natural cause":
+ {
+ "predation":
+ {
+ "Options": {
+ "predator" : ["cat", "dog", "rooster/hen", "other domestic animal", "wild birds",
+ "wild mammal", "other predator", "unknown predator"]
+ }
+ },
+ "weather":
+ {
+ "Options": {
+ "condition" : ["cold wave", "drought", "hail", "lightening", "storm", "other weather", "unknown weather"]
+ }
+ },
+ "natural disaster":
+ {
+ "Options": {
+ "disaster" : ["fire", "avalanche", "rock fall", "mudslide", "volcanic eruption/ashes", "other natural disaster", "unknown natural disaster"]
+ }
+ },
+ "nest fall": {},
+ "stranding due to exhaustion": {},
+ "disease/parasite": {},
+ "accidental drowing":
+ {
+ "Options": {
+ "drowning_location" : ["drinking trough", "pool", "storm pool", "irrigation pool", "natural pool", "flood", "other location", "unknown location"]
+ }
+ },
+ "other natural cause": {},
+ "unknown": {}
+ },
+ "Unknown": {}
+}
diff --git a/app/assets/config/config_followup.json b/app/assets/config/config_followup.json
new file mode 100644
index 0000000000000000000000000000000000000000..b4de7d85069be7b2fdae89a347e0c4b2826a8527
--- /dev/null
+++ b/app/assets/config/config_followup.json
@@ -0,0 +1,23 @@
+{
+ "Event follow-up":
+ {
+ "Animal collected": {
+ "Options": ["Yes", "No"]
+ },
+ "Recipient": {
+ "Options": ["Veterinary", "Care center", "Local Museum", "National Museum", "Other"]
+ },
+ "Radiography": {
+ "Options": ["Yes", "No", "Unknown"]
+ },
+ "Given answer": {
+ "Options": ["Nothing", "Complaint against X", "Complaint", "Police call", "Discussion with the speaker", "Press release", "Unknown"]
+ },
+ "Name of recipient / museum": {
+ "Open": {}
+ },
+ "Collection reference": {
+ "Open": {}
+ }
+ }
+}
\ No newline at end of file
diff --git a/app/assets/fonts/LiberationSans-Regular.ttf b/app/assets/fonts/LiberationSans-Regular.ttf
new file mode 100644
index 0000000000000000000000000000000000000000..59d2e251b04ce9540c1915c5bd153cd1a709390c
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diff --git a/app/assets/images/bird.png b/app/assets/images/bird.png
new file mode 100644
index 0000000000000000000000000000000000000000..a559db324d241b852af1afa71affb6d0003bc244
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diff --git a/app/assets/images/bird_boxed.png b/app/assets/images/bird_boxed.png
new file mode 100644
index 0000000000000000000000000000000000000000..1459e0263550396bab706f06542b44b8a17879a9
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diff --git a/app/assets/images/empty_image.jpg b/app/assets/images/empty_image.jpg
new file mode 100644
index 0000000000000000000000000000000000000000..afa6733e7f8924bb2d362d15271a9270fa47413c
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diff --git a/app/assets/logos/destruction.png b/app/assets/logos/destruction.png
new file mode 100644
index 0000000000000000000000000000000000000000..416cbba762e786c2f060260d7c856d1a5ba6a51e
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diff --git a/app/assets/logos/indirect.png b/app/assets/logos/indirect.png
new file mode 100644
index 0000000000000000000000000000000000000000..26bf942860941d3a48007419225a185306bc91b0
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diff --git a/app/assets/logos/natural.png b/app/assets/logos/natural.png
new file mode 100644
index 0000000000000000000000000000000000000000..e507e240ab9c55ba4024ac21c5f294474dfc6cc0
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diff --git a/app/assets/logos/van.png b/app/assets/logos/van.png
new file mode 100644
index 0000000000000000000000000000000000000000..1fb05912b28fa578e05ec0fc664b07fc9883e21c
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diff --git a/app/assets/tmp_json/.gitkeep b/app/assets/tmp_json/.gitkeep
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/app/assets/tmp_json/tmp_wounded_dead.json b/app/assets/tmp_json/tmp_wounded_dead.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e26dfeeb6e641a33dae4961196235bdb965b21b
--- /dev/null
+++ b/app/assets/tmp_json/tmp_wounded_dead.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/app/behavior/__init__.py b/app/behavior/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/app/behavior/__pycache__/__init__.cpython-312.pyc b/app/behavior/__pycache__/__init__.cpython-312.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..913df0ef6a819ee665ee3738d136ae3d8d66312e
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diff --git a/app/behavior/__pycache__/behavior_checkbox.cpython-312.pyc b/app/behavior/__pycache__/behavior_checkbox.cpython-312.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..2e210f5d1f0a86117a1f9a2e0b444131d0ac184f
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diff --git a/app/behavior/__pycache__/class_behavior.cpython-312.pyc b/app/behavior/__pycache__/class_behavior.cpython-312.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..91743657d467f8e9728be5e98425dcc3da58aa19
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diff --git a/app/behavior/behavior_checkbox.py b/app/behavior/behavior_checkbox.py
new file mode 100644
index 0000000000000000000000000000000000000000..70c4a445314b705f3eed0917803d26d74f60206e
--- /dev/null
+++ b/app/behavior/behavior_checkbox.py
@@ -0,0 +1,30 @@
+import gradio as gr
+from utils.utils_config import get_custom_config_dropdowns
+from utils.utils_checkbox import create_checkbox
+from utils.utils_visible import set_visible
+from validation_submission.add_json import add_data_tmp
+
+def on_select_behavior(behavior_checkbox):
+ behavior_checkbox = [behavior.lower() for behavior in behavior_checkbox]
+ add_data_tmp("wounded_dead", "behaviors_type", behavior_checkbox)
+
+def retrieve_behavior_options_description():
+ dropdown_config = get_custom_config_dropdowns("config_checkbox_behavior.json")
+ options = list(dropdown_config.keys())
+ options = [option.title() for option in options]
+ descriptions =[]
+ for _,subdict in dropdown_config.items():
+ descriptions.append(subdict["Description"])
+ return options, descriptions
+
+def create_behavior_checkbox(section: str, visible):
+ options, descriptions = retrieve_behavior_options_description()
+ label_checkbox = "Behavior changes observed"
+ checkbox, text = create_checkbox("", section, label_checkbox, visible, options, descriptions)
+ return checkbox, text
+
+def show_behavior(choice, section: str):
+ visible = set_visible(choice)
+ checkbox, text = create_behavior_checkbox(section, visible)
+ add_data_tmp("wounded_dead", "behaviors_radio", choice)
+ return checkbox, text
\ No newline at end of file
diff --git a/app/behavior/class_behavior.py b/app/behavior/class_behavior.py
new file mode 100644
index 0000000000000000000000000000000000000000..4d8d89dfec6764108bb4374e44f2a89a5d00b621
--- /dev/null
+++ b/app/behavior/class_behavior.py
@@ -0,0 +1,66 @@
+from pydantic import BaseModel, Field
+from typing import Literal, List, Union, Optional
+
+class Behavior(BaseModel):
+ type: str
+ description: Optional[str] = None # Making the description field optional
+
+# --- Specific Behavior classes ---
+class AbnormalBreathing(Behavior):
+ type: Literal['abnormal breathing']
+ description: Optional[Literal["Problems breathing, breathing sounds"]] = None
+
+class CrashFalling(Behavior):
+ type: Literal['crash, falling from the sky']
+ description: Optional[Literal["Suddenly falling from the sky"]] = None
+
+class Diarrhea(Behavior):
+ type: Literal['diarrhea']
+ description: Optional[Literal["Observed diarrhea"]] = None
+
+class Lameness(Behavior):
+ type: Literal['lameness']
+ description: Optional[Literal["Apparent limping or not able to walk properly"]] = None
+
+class Neurological(Behavior):
+ type: Literal['neurological']
+ description: Optional[Literal["Circling, incoordination, tremors, convulsions, fast eye movements"]] = None
+
+class OtherAbnormalBehavior(Behavior):
+ type: Literal['other abnormal behavior']
+ description: Optional[Literal["Other than weakness, other than neurologic"]] = None
+
+class UnableToFly(Behavior):
+ type: Literal['unable to fly']
+ description: Optional[Literal["Animal alert and tries to fly but can not take off"]] = None
+
+class Vomiting(Behavior):
+ type: Literal['vomiting']
+ description: Optional[Literal["Throwing up undigested food, regurgitating"]] = None
+
+class Weakness(Behavior):
+ type: Literal['weakness']
+ description: Optional[Literal["Non responsive, does not fly away when approached, lethargy"]] = None
+
+class NoChanges(Behavior):
+ type: Literal['no changes']
+ description: Optional[Literal["Animal is acting normally"]] = None
+
+# Union of all possible behaviors
+BehaviorType = Union[
+ AbnormalBreathing,
+ CrashFalling,
+ Diarrhea,
+ Lameness,
+ Neurological,
+ OtherAbnormalBehavior,
+ UnableToFly,
+ Vomiting,
+ Weakness,
+ NoChanges
+]
+
+# Main class that logs multiple behaviors
+class Behaviors(BaseModel):
+ behaviors_radio: str # e.g., "Yes"
+ behaviors_type: Optional[List[BehaviorType]] = None
diff --git a/app/circumstances/__init__.py b/app/circumstances/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/app/circumstances/__pycache__/__init__.cpython-312.pyc b/app/circumstances/__pycache__/__init__.cpython-312.pyc
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diff --git a/app/circumstances/circumstances.py b/app/circumstances/circumstances.py
new file mode 100644
index 0000000000000000000000000000000000000000..602268d031d2ecd279019adb194e8e438246e71b
--- /dev/null
+++ b/app/circumstances/circumstances.py
@@ -0,0 +1,67 @@
+import gradio as gr
+import os
+from dotenv import load_dotenv
+
+from utils.utils_visible import set_visible
+from validation_submission.add_json import add_data_tmp
+
+load_dotenv()
+PATH = os.getcwd() + "/"
+PATH_ASSETS = os.getenv('PATH_ASSETS')
+LOGO_PATH = PATH + PATH_ASSETS + "logos"
+
+CAUSE_COL_WIDTH = "50px"
+
+
+def show_circumstances(choice):
+ visible = set_visible(choice)
+ add_data_tmp("wounded_dead",
+ "circumstance_radio",
+ choice)
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2 = create_circumstances(visible)
+ return button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2
+
+def create_circumstances(visible):
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause = create_circumstances_buttons(visible)
+ dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2 = create_circumstances_dropdown(visible)
+ return button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2
+
+def create_circumstances_buttons(visible):
+ with gr.Row() as image_row:
+ with gr.Column(scale=1, min_width=CAUSE_COL_WIDTH):
+ button_collision = gr.Button("Collision with a means of transport",
+ visible=visible,
+ icon=LOGO_PATH + '/van.png',
+ elem_id="buttons-conditions")
+
+ with gr.Column(scale=1, min_width=CAUSE_COL_WIDTH):
+ button_deliberate_destruction = gr.Button("Destruction / Deliberatly removed",
+ icon=LOGO_PATH + '/destruction.png',
+ visible=visible,
+ elem_id="buttons-conditions")
+
+ with gr.Column(scale=1, min_width=CAUSE_COL_WIDTH):
+ button_indirect_destruction = gr.Button("Indirect destruction",
+ icon=LOGO_PATH + '/indirect.png',
+ visible=visible,
+ elem_id="buttons-conditions")
+
+ with gr.Column(scale=1, min_width=CAUSE_COL_WIDTH):
+ button_natural_cause = gr.Button("Natural cause",
+ icon=LOGO_PATH + '/natural.png',
+ visible=visible,
+ elem_id="buttons-conditions")
+ return button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause
+
+def create_circumstances_dropdown(visible):
+ with gr.Row() as dropdown_row:
+ dropdown = gr.Dropdown(choices=[],
+ label="Choices will appear here...",
+ visible=visible, interactive=False, elem_id="dropdown-conditions")
+ openfield_level2 = gr.Textbox(visible=False, elem_id="dropdown-conditions")
+ dropdown_level2 = gr.Dropdown(choices=[], visible=False, elem_id="dropdown-conditions")
+ dropdown_extra_level2 = gr.Dropdown(choices=[], visible=False, elem_id="dropdown-conditions")
+ return dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2
+
+
+
\ No newline at end of file
diff --git a/app/circumstances/circumstances_dropdowns.py b/app/circumstances/circumstances_dropdowns.py
new file mode 100644
index 0000000000000000000000000000000000000000..a562620a61dae08a3b0392a3faa8cd27b1f6079a
--- /dev/null
+++ b/app/circumstances/circumstances_dropdowns.py
@@ -0,0 +1,112 @@
+import gradio as gr
+from utils.utils_config import get_custom_config_dropdowns
+from validation_submission.add_json import add_data_tmp
+
+#--------------------------------------------------------- LEVEL 1 DROPDOWNS
+def retrieve_config_options(label, dropdown_config):
+ options = list(dropdown_config[label].keys())
+ options = [option.title() for option in options]
+ return options
+
+def reinitialise_level2():
+ dropdown_level2 = gr.Dropdown(choices=[], visible=False)
+ openfield_level2 = gr.Textbox(visible=False)
+ dropdown_extra_level2 = gr.Dropdown(choices=[], visible=False)
+ return dropdown_level2, openfield_level2, dropdown_extra_level2
+
+def create_dropdown_level1(label):
+ dropdown_config = get_custom_config_dropdowns("config_dropdown_circumstances.json")
+ options = retrieve_config_options(label, dropdown_config)
+ dropdown = gr.Dropdown(choices=options, label=label, interactive=True, visible=True)
+ dropdown_level2, openfield_level2, dropdown_extra_level2 = reinitialise_level2()
+ return dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2
+
+def dropdown_collision():
+ label = "Collision with a means of transport"
+ add_data_tmp("wounded_dead", "circumstance", label.lower())
+ return create_dropdown_level1(label)
+
+def dropdown_deliberate_destruction():
+ label = "Destruction / Deliberatly removed"
+ add_data_tmp("wounded_dead", "circumstance", label.lower())
+ return create_dropdown_level1(label)
+
+def dropdown_indirect_destruction():
+ label = "Indirect destruction"
+ add_data_tmp("wounded_dead", "circumstance", label.lower())
+ return create_dropdown_level1(label)
+
+def dropdown_natural_cause():
+ label = "Natural cause"
+ add_data_tmp("wounded_dead", "circumstance", label.lower())
+ return create_dropdown_level1(label)
+
+
+#--------------------------------------------------------- LEVEL 2 DROPDOWNS
+def get_options(value):
+ value = value.lower()
+ options_label = None
+ options_dropdown= None
+ open_field = None
+ extras = None
+ extras_label = None
+ dropdown_config = get_custom_config_dropdowns("config_dropdown_circumstances.json")
+ for _, sub_dict in dropdown_config.items():
+ nested_dict = sub_dict.get(value)
+ if nested_dict is not None:
+ if "Options" in nested_dict.keys():
+ options_dict = nested_dict["Options"]
+ options_label = list(options_dict.keys())[0]
+ options_dropdown = list(options_dict.values())[0]
+ options_dropdown = [option.title() for option in options_dropdown]
+ if "Open" in nested_dict.keys():
+ open_field = nested_dict["Open"]
+ open_field = open_field.title()
+ if "Extra" in nested_dict.keys():
+ for key, val in nested_dict["Extra"].items():
+ extras_label = key
+ extras = val
+ extras = [extra.title() for extra in extras]
+ return options_label, options_dropdown, open_field, extras, extras_label
+
+
+def on_select(evt: gr.SelectData): # SelectData is a subclass of EventData
+ options_label, options_dropdown, open_field, extras, extras_label = get_options(evt.value)
+ add_data_tmp("wounded_dead",
+ "circumstance_type",
+ {"type": (evt.value).lower(),
+ "option_dropdown_label" : options_label.lower() if options_label is not None else 'NA',
+ "open_field_label" : open_field.lower() if open_field is not None else 'NA',
+ "extra_label": extras_label.lower() if extras_label is not None else 'NA'
+ })
+ if options_dropdown is not None:
+ dropdown_level2 = gr.Dropdown(choices=options_dropdown, label=evt.value, interactive=True, visible=True)
+ else:
+ dropdown_level2 = gr.Dropdown(choices=[], visible=False)
+
+ if open_field is not None:
+ openfield_level2 = gr.Textbox(label=open_field, interactive=True, visible=True)
+ else:
+ openfield_level2 = gr.Textbox(visible=False)
+
+ if extras is not None:
+ dropdown_extra_level2 = gr.Dropdown(choices=extras, label=extras_label, interactive=True, visible=True)
+ else:
+ dropdown_extra_level2 = gr.Dropdown(choices=[], visible=False)
+ return dropdown_level2, openfield_level2, dropdown_extra_level2
+
+def on_select_dropdown_level2(evt: gr.SelectData):
+ add_data_tmp("wounded_dead",
+ "circumstance_option_dropdown",
+ evt.value.lower())
+
+def on_select_dropdown_extra_level2(evt: gr.SelectData):
+ add_data_tmp("wounded_dead",
+ "circumstance_extra",
+ evt.value.lower())
+
+def on_change_openfield_level2(openfield_level2_dead):
+ print("Saving open field")
+ add_data_tmp("wounded_dead",
+ "circumstance_open_field",
+ str(openfield_level2_dead).lower())
\ No newline at end of file
diff --git a/app/circumstances/class_circumstance.py b/app/circumstances/class_circumstance.py
new file mode 100644
index 0000000000000000000000000000000000000000..935f42a24ddf19c1e8c7047cdad72159e7c778e6
--- /dev/null
+++ b/app/circumstances/class_circumstance.py
@@ -0,0 +1,205 @@
+from pydantic import BaseModel, Field
+from typing import Literal, List, Union, Optional
+
+# Base class for CircumstanceType with a discriminator field 'type'
+class CircumstanceTypeBase(BaseModel):
+ type: str
+
+# Collision with means of transport
+class RoadVehicleCollision(CircumstanceTypeBase):
+ type: Literal['road_vehicle']
+ infrastructure_number: Optional[str] = None
+ road_type: Literal['highway', 'main road',
+ 'secondary road', 'local road/path/trail',
+ 'parking lot']
+
+class TrainCollision(CircumstanceTypeBase):
+ type: Literal['train']
+ infrastructure_number: str
+
+class AircraftCollision(CircumstanceTypeBase):
+ type: Literal['aircraft']
+
+class BoatCollision(CircumstanceTypeBase):
+ type: Literal['boat']
+
+class OtherTransportCollision(CircumstanceTypeBase):
+ type: Literal['other transport collision']
+
+class UnknownTransportCollision(CircumstanceTypeBase):
+ type: Literal['unknown transport collision']
+
+# Destruction / Deliberately removed
+class HuntingDestruction(CircumstanceTypeBase):
+ type: Literal['hunting']
+ method: Literal['shooting', 'bow', 'falconry',
+ 'hounds hunting', 'digging up',
+ "other hunting", "unknow hunting"]
+
+class TrapDestruction(CircumstanceTypeBase):
+ type: Literal['trap']
+ method: Literal['killing trap', 'pole trap', 'trap cage', 'corvids nasse',
+ 'net', 'cage trap', 'fall-trap', 'glue trap', 'insect trap',
+ "other trap", "unknown trap"]
+
+class PoisoningDestruction(CircumstanceTypeBase):
+ type: Literal['poisoning']
+
+class RemovalDestruction(CircumstanceTypeBase):
+ type: Literal['removal or direct capture']
+ method: Literal['gassing', 'raptor captured at nest', 'brood destruction',
+ 'traffic/trade', 'capture accident', 'scientific sample',
+ "other removal", "unknown removal"]
+
+class FishingDestruction(CircumstanceTypeBase):
+ type: Literal['fishing']
+ method: Literal['drowned/tangled', 'beached with capture indications', "other fishing", "unknown fishing"]
+
+class OtherDestruction(CircumstanceTypeBase):
+ type: Literal['other destruction']
+
+class UnknownDestruction(CircumstanceTypeBase):
+ type: Literal['unknown destruction']
+
+# Indirect destruction
+class PylonElectricGridDestruction(CircumstanceTypeBase):
+ type: Literal['pylone and electric grid']
+ infrastructure: Literal['electric line', 'pole/pylon', "other structure", "unknown structure"]
+ cause: Literal['collision', 'electrocution']
+
+class WindfarmDestruction(CircumstanceTypeBase):
+ type: Literal['windfarm']
+
+class OtherCollisionDestruction(CircumstanceTypeBase):
+ type: Literal['other collision']
+ object: Literal['window', 'building', 'lighthouse',
+ 'cable', 'wire fence/barbed wire', 'other crash', 'unknown crash']
+
+class FallDestruction(CircumstanceTypeBase):
+ type: Literal['fall']
+ location: Literal['chimney', 'empty pole', 'hole/well', 'other fall', 'unknown fall']
+
+class DevelopmentWorkDestruction(CircumstanceTypeBase):
+ type: Literal['development work']
+ work_type: Literal['transport infrastructure', 'building', 'other work', 'unknown work']
+
+class PollutionContaminationDestruction(CircumstanceTypeBase):
+ type: Literal['pollution / contamination']
+ pollution_type: Literal['oil pollution', 'chemical pollution', 'heavy metals',
+ 'light', 'noise',
+ 'plastic ingestion', 'other pollution', 'unknown pollution']
+
+class AgriculturalNetProtectionDestruction(CircumstanceTypeBase):
+ type: Literal['agricultural net protection']
+
+class VegetalForestWorkDestruction(CircumstanceTypeBase):
+ type: Literal['vegetal / forest work']
+ work_type: Literal['clearing/mowing/plowing', 'tree felling/pruning',
+ 'other forest work', 'unknown forest work']
+
+class OtherIndirectDestruction(CircumstanceTypeBase):
+ type: Literal['other indirect desctruction']
+
+class UnknownIndirectDestruction(CircumstanceTypeBase):
+ type: Literal['unknown indirect desctruction']
+
+# Natural cause
+class Predation(CircumstanceTypeBase):
+ type: Literal['predation']
+ predator: Literal['cat', 'dog', 'rooster/hen',
+ 'other domestic animal', 'wild birds',
+ 'wild mammal', 'other predator', 'unknown predator']
+
+class Weather(CircumstanceTypeBase):
+ type: Literal['weather']
+ condition: Literal['cold wave', 'drought', 'hail',
+ 'lightening', 'storm',
+ 'other weather', 'unknown weather']
+
+class NaturalDisaster(CircumstanceTypeBase):
+ type: Literal['natural disaster']
+ disaster: Literal['fire', 'avalanche', 'rock fall',
+ 'mudslide', 'volcanic eruption/ashes',
+ 'other natural disaster', 'unknown natural disaster']
+
+class NestFall(CircumstanceTypeBase):
+ type: Literal['nest fall']
+
+class StrandingExhaustion(CircumstanceTypeBase):
+ type: Literal['stranding due to exhaustion']
+
+class DiseaseParasite(CircumstanceTypeBase):
+ type: Literal['disease/parasite']
+
+class AccidentalDrowning(CircumstanceTypeBase):
+ type: Literal['accidental drowning']
+ drowning_location: Literal['drinking trough', 'pool',
+ 'storm pool', 'irrigation pool',
+ 'natural pool', 'flood',
+ 'other location', 'unknown location']
+
+class OtherNaturalCause(CircumstanceTypeBase):
+ type: Literal['other natural cause']
+
+class UnknownNaturalCause(CircumstanceTypeBase):
+ type: Literal['unknown natural cause']
+
+# Unknown cause
+class UnknownCircumstance(CircumstanceTypeBase):
+ type: Literal['unknown']
+
+# Union of all possible CircumstanceTypes with 'type' as the discriminator
+CircumstanceType = Union[
+ RoadVehicleCollision,
+ TrainCollision,
+ AircraftCollision,
+ BoatCollision,
+ OtherTransportCollision,
+ UnknownTransportCollision,
+ HuntingDestruction,
+ TrapDestruction,
+ PoisoningDestruction,
+ RemovalDestruction,
+ FishingDestruction,
+ OtherDestruction,
+ UnknownDestruction,
+ PylonElectricGridDestruction,
+ WindfarmDestruction,
+ OtherCollisionDestruction,
+ FallDestruction,
+ DevelopmentWorkDestruction,
+ PollutionContaminationDestruction,
+ AgriculturalNetProtectionDestruction,
+ VegetalForestWorkDestruction,
+ OtherIndirectDestruction,
+ UnknownIndirectDestruction,
+ Predation,
+ Weather,
+ NaturalDisaster,
+ NestFall,
+ StrandingExhaustion,
+ DiseaseParasite,
+ AccidentalDrowning,
+ OtherNaturalCause,
+ UnknownNaturalCause,
+ UnknownCircumstance
+]
+
+# Main Circumstance class
+class Circumstances(BaseModel):
+ circumstance_radio: str # e.g., "Yes"
+ circumstance: Optional[str] = None # e.g., "COLLISION"
+ circumstance_type: Optional[CircumstanceType] = Field(None, discriminator='type')
+
+
+# Example usage
+# json_data = {
+# "circumstance": "COLLISION",
+# "circumstance_radio": "Yes",
+# "circumstance_type": {
+# "type": "Train",
+# "infrastructure_number": "56"
+# }
+# }
+# circumstance_instance = Circumstance(**json_data)
+# circumstance_schema = Circumstance.schema_json(indent=2)
\ No newline at end of file
diff --git a/app/classes.py b/app/classes.py
new file mode 100644
index 0000000000000000000000000000000000000000..d6a0679acaf1ba556c7efb70008c940ba57524e3
--- /dev/null
+++ b/app/classes.py
@@ -0,0 +1,46 @@
+from pydantic import BaseModel, Field
+from typing import Optional
+import numpy as np
+from PIL import Image
+import io
+import base64
+import uuid
+
+from behavior.class_behavior import Behaviors
+from circumstances.class_circumstance import Circumstances
+from physical.class_physical import PhysicalAnomalies
+from follow_up.class_follow_up import FollowUpEvents
+from geolocalisation.class_geolocalisation import Geolocalisation
+
+class Wounded(BaseModel):
+ circumstances: Circumstances
+ behaviors: Behaviors
+ physical_anomalies: PhysicalAnomalies
+ follow_up_events: FollowUpEvents
+
+class Dead(BaseModel):
+ circumstances: Circumstances
+ physical_anomalies: PhysicalAnomalies
+ follow_up_events: FollowUpEvents
+
+class ImageBase64(BaseModel):
+ image: str
+ @classmethod
+ def to_base64(cls, pixel_data: list):
+ img_array = np.array(pixel_data, dtype=np.uint8)
+ img = Image.fromarray(img_array)
+ # Save the image to a bytes buffer
+ buffer = io.BytesIO()
+ img.save(buffer, format="PNG")
+ buffer.seek(0)
+ base64_str = base64.b64encode(buffer.read()).decode('utf-8')
+ return cls(image=base64_str)
+
+class Report(BaseModel):
+ identifier: str
+ image: ImageBase64
+ geolocalisation: Geolocalisation
+ wounded_state: str
+ wounded: Optional[Wounded] = None
+ dead_state: str
+ dead: Optional[Dead] = None
diff --git a/app/dead.py b/app/dead.py
new file mode 100644
index 0000000000000000000000000000000000000000..20a87ef66536f33834b816eabe83b7a3a694cebc
--- /dev/null
+++ b/app/dead.py
@@ -0,0 +1,40 @@
+import gradio as gr
+from circumstances.circumstances import create_circumstances
+from physical.physical_select_animal import create_bird_anatomy
+from physical.physical_checkbox import process_body_parts
+from follow_up.followup_events import create_followup_dropdowns, create_followup_open
+from validation_submission.add_json import add_data_to_individual
+
+def show_section_dead(visible):
+ if visible==True:
+ add_data_to_individual("wounded_state", "No")
+ add_data_to_individual("dead_state", "Yes")
+
+ with gr.Column(visible=visible, elem_id="dead") as section_dead:
+ gr.Markdown("# Dead Animal")
+
+ gr.Markdown("## Do you know what conditions caused this?", label="description")
+ radio_cause = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2 = create_circumstances(visible=False)
+
+ gr.Markdown("## Are there physical changes on the bird?" , label="description")
+ radio_physical = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+ with gr.Row():
+ physical_boxes = create_bird_anatomy(False, "dead")
+ with gr.Column():
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs = process_body_parts("dead", "None")
+
+ gr.Markdown("## Follow-Up Events", label="Title")
+ gr.Markdown("Please tell us what you did with the animal.", label="description")
+ with gr.Row():
+ fe_collection_dropdown, fe_recepient_dropdown, fe_radio_dropdown, fe_answer_dropdown = create_followup_dropdowns(visible, "dead")
+ with gr.Row():
+ fe_name_recipient, fe_collection_ref = create_followup_open(visible, "dead")
+
+
+ return section_dead, radio_cause, radio_physical,\
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, \
+ dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2, \
+ physical_boxes, \
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs, \
+ fe_collection_dropdown, fe_recepient_dropdown, fe_radio_dropdown, fe_answer_dropdown, fe_name_recipient, fe_collection_ref
diff --git a/app/display.py b/app/display.py
new file mode 100644
index 0000000000000000000000000000000000000000..9f1fdf92860e9fd06148504de3b54d892c82b61c
--- /dev/null
+++ b/app/display.py
@@ -0,0 +1,120 @@
+import gradio as gr
+import pandas as pd
+from gradio_modal import Modal
+from PIL import Image
+from io import BytesIO
+import base64
+
+from validation_submission.submission import validate_save_individual
+from validation_submission.get_json import get_json_all_individuals
+
+HEADERS = ["Identifier", "Location", "Wounded", "Dead"]
+
+
+def save_display_individual(gallery, df, error_box):
+ individual, error_box = validate_save_individual(error_box)
+ if individual:
+ all_animals = get_json_all_individuals()
+ gallery_animals = process_animals_for_gallery(all_animals)
+ gallery = make_gallery(gallery_animals)
+ df_animals = process_animals_for_df(all_animals)
+ df = make_df(df_animals)
+ return gallery, df, error_box
+
+# ----------------------------------
+# GALLERY
+
+def convert_image(image_base64_str):
+ im = Image.open(BytesIO(base64.b64decode(image_base64_str)))
+ return im
+
+def set_gallery_size(len_animals):
+ if len_animals < 10:
+ num_cols=5
+ num_rows=2
+ else:
+ num_cols = len_animals/2
+ num_rows = len_animals/(num_cols)
+ return num_cols, num_rows
+
+def process_animals_for_gallery(all_animals):
+ gallery_animals = []
+ for _, animal in all_animals.items():
+ image = convert_image(animal["image"]["image"])
+ caption = animal["identifier"]
+ animal = (image, caption)
+ gallery_animals.append(animal)
+ return gallery_animals
+
+def make_gallery(gallery_animals):
+ num_cols, num_rows = set_gallery_size(len(gallery_animals))
+ gallery = gr.Gallery(
+ label="Gallery of Records", elem_id="gallery",
+ columns=[num_cols], rows=[num_rows],
+ value=gallery_animals,
+ object_fit="contain", height="auto", interactive=False)
+ return gallery
+
+def keep_only_values(dict_to_filter):
+ info_text = ""
+ values_to_ignore = ["Yes", "No", "NA"]
+ if dict_to_filter:
+ for key, val in dict_to_filter.items():
+ if type(val) is dict:
+ subset_text = keep_only_values(val)
+ info_text += f"{subset_text}"
+ elif type(val) is list:
+ for item in val:
+ if type(item) is dict:
+ subset_text = keep_only_values(item)
+ info_text += f"{subset_text}"
+ elif (val is not None) and (type(val) is not bool) and (val not in values_to_ignore):
+ info_text += f" {key} : {val} |"
+ else:
+ print("Ignoring value: ", val)
+ print("Associated key: ", key)
+ else:
+ info_text = "NaN"
+ return info_text
+
+# ----------------------------------
+# DATAFRAME
+
+def process_animals_for_df(all_animals):
+ df_animals = {}
+ identifiers =[]
+ geo =[]
+ wounded =[]
+ dead =[]
+ for _, animal in all_animals.items():
+ identifier_value = animal["identifier"]
+ identifiers.append(identifier_value)
+ geo_dict = animal["geolocalisation"]
+ geo_values = keep_only_values(geo_dict)
+ geo.append(geo_values)
+ wounded_dict = animal["wounded"]
+ wounded_values = keep_only_values(wounded_dict)
+ wounded.append(wounded_values)
+ dead_dict = animal["dead"]
+ dead_values = keep_only_values(dead_dict)
+ dead.append(dead_values)
+ df_animals["Identifier"] = identifiers
+ df_animals["Location"] = geo
+ df_animals["Wounded"] = wounded
+ df_animals["Dead"] = dead
+ return df_animals
+
+
+def make_df(df_animals):
+ df = pd.DataFrame.from_dict(df_animals)
+ styled_df = df.style.set_properties(**{
+ 'min-width': '25px',
+ 'max-width': '50px', # Adjust width as needed
+ 'white-space': 'normal', # Allows text to wrap to the next line
+ 'word-wrap': 'break-word' # Breaks long words to fit within the width
+ })
+ df_gradio = gr.DataFrame(visible=True,
+ value=styled_df,
+ headers=HEADERS, interactive=False)
+ return df_gradio
+
diff --git a/app/follow_up/__pycache__/class_follow_up.cpython-312.pyc b/app/follow_up/__pycache__/class_follow_up.cpython-312.pyc
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diff --git a/app/follow_up/__pycache__/followup_events.cpython-312.pyc b/app/follow_up/__pycache__/followup_events.cpython-312.pyc
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diff --git a/app/follow_up/class_follow_up.py b/app/follow_up/class_follow_up.py
new file mode 100644
index 0000000000000000000000000000000000000000..4ff1cfe5769d5ec668b19cdca860450efa113111
--- /dev/null
+++ b/app/follow_up/class_follow_up.py
@@ -0,0 +1,50 @@
+from pydantic import BaseModel, Field
+from typing import Literal, Union, Optional, List
+
+# --- Event follow-up classes ---
+
+class AnimalCollectedEvent(BaseModel):
+ type: Literal['animal collected']
+ collected: Literal['yes', 'no']
+
+class RecipientEvent(BaseModel):
+ type: Literal['recipient']
+ recipient: Literal['veterinary', 'care center',
+ 'local museum', 'national museum',
+ 'other']
+
+class RadiographyEvent(BaseModel):
+ type: Literal['radiography']
+ radiography: Literal['yes', 'no', 'unknown']
+
+class GivenAnswerEvent(BaseModel):
+ type: Literal['given answer']
+ answer: Literal[
+ 'nothing',
+ 'complaint against x',
+ 'complaint',
+ 'police call',
+ 'discussion with the speaker',
+ 'press release',
+ 'unknown'
+ ]
+
+class NameOfRecipientEvent(BaseModel):
+ type: Literal['recipient name']
+ name: str
+
+class CollectionReferenceEvent(BaseModel):
+ type: Literal['collection reference']
+ reference: str
+
+FollowUpEventType = Union[
+ AnimalCollectedEvent,
+ RecipientEvent,
+ RadiographyEvent,
+ GivenAnswerEvent,
+ NameOfRecipientEvent,
+ CollectionReferenceEvent
+]
+
+class FollowUpEvents(BaseModel):
+ follow_up_events: Optional[List[FollowUpEventType]] = None
\ No newline at end of file
diff --git a/app/follow_up/followup_events.py b/app/follow_up/followup_events.py
new file mode 100644
index 0000000000000000000000000000000000000000..11bad2183a6ab8473c3293758a8afe6efa0d989d
--- /dev/null
+++ b/app/follow_up/followup_events.py
@@ -0,0 +1,46 @@
+import gradio as gr
+from utils.utils_config import get_custom_config_dropdowns
+from validation_submission.add_json import add_data_tmp
+
+def create_followup_dropdowns(visible, elem_id):
+ followup_config = get_custom_config_dropdowns("config_followup.json")
+ followup_config = followup_config["Event follow-up"]
+ fe_collection_dropdown = create_fe_collection_dropdown(followup_config, visible, elem_id)
+ fe_recipient_dropdown = create_fe_recipient_dropdown(followup_config, visible, elem_id)
+ fe_radio_dropdown = create_fe_radio_dropdown(followup_config, visible, elem_id)
+ fe_answer_dropdown = create_fe_answer_dropdown(followup_config, visible, elem_id)
+ return fe_collection_dropdown, fe_recipient_dropdown, fe_radio_dropdown, fe_answer_dropdown
+
+def create_followup_open(visible, elem_id):
+ fe_name_recipient = gr.Textbox(label="Name of recipient / museum", visible=visible,
+ elem_id=elem_id, interactive=True)
+ fe_collection_ref = gr.Textbox(label="Collection reference", visible=visible,
+ elem_id=elem_id, interactive=True)
+ return fe_name_recipient, fe_collection_ref
+
+
+def create_fe_collection_dropdown(followup_config, visible, elem_id):
+ fe_collection_dropdown = gr.Dropdown(choices=followup_config["Animal collected"]["Options"], label="Animal collected",
+ visible=visible, elem_id=elem_id, interactive=True)
+ return fe_collection_dropdown
+
+def create_fe_recipient_dropdown(followup_config, visible, elem_id):
+ fe_recipient_dropdown = gr.Dropdown(choices=followup_config["Recipient"]["Options"], label="Recipient",
+ visible=visible, elem_id=elem_id, interactive=True)
+ return fe_recipient_dropdown
+
+def create_fe_radio_dropdown(followup_config, visible, elem_id):
+ fe_radio_dropdown = gr.Dropdown(choices=followup_config["Radiography"]["Options"], label="Radiography",
+ visible=visible, elem_id=elem_id, interactive=True)
+ return fe_radio_dropdown
+
+def create_fe_answer_dropdown(followup_config, visible, elem_id):
+ fe_answer_dropdown = gr.Dropdown(choices=followup_config["Given answer"]["Options"], label="Given answer",
+ visible=visible, elem_id=elem_id, interactive=True)
+ return fe_answer_dropdown
+
+def save_fe(value, key):
+ add_data_tmp("wounded_dead", "followup " + key.lower(), value.lower())
+
+
+
\ No newline at end of file
diff --git a/app/geolocalisation/__init__.py b/app/geolocalisation/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
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diff --git a/app/geolocalisation/__pycache__/js_geolocation.cpython-312.pyc b/app/geolocalisation/__pycache__/js_geolocation.cpython-312.pyc
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diff --git a/app/geolocalisation/__pycache__/maps.cpython-312.pyc b/app/geolocalisation/__pycache__/maps.cpython-312.pyc
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diff --git a/app/geolocalisation/class_geolocalisation.py b/app/geolocalisation/class_geolocalisation.py
new file mode 100644
index 0000000000000000000000000000000000000000..fa0f0a5316a51f5314abddcc8bd7970c010932ce
--- /dev/null
+++ b/app/geolocalisation/class_geolocalisation.py
@@ -0,0 +1,16 @@
+from pydantic import BaseModel, Field
+from typing import Literal, List, Union
+
+class Longitude(BaseModel):
+ type: Literal['longitude']
+ value: float
+
+class Latitude(BaseModel):
+ type: Literal['latitude']
+ value: float
+
+class Geolocalisation(BaseModel):
+ longitude: Longitude
+ latitude: Latitude
+ name: str
+
diff --git a/app/geolocalisation/js_geolocation.py b/app/geolocalisation/js_geolocation.py
new file mode 100644
index 0000000000000000000000000000000000000000..055ee262a3bdd9b00fc483bc4d0b93381a99164f
--- /dev/null
+++ b/app/geolocalisation/js_geolocation.py
@@ -0,0 +1,35 @@
+# JavaScript code to get location and update hidden_input
+js_geocode = """
+ function() {
+ var textbox = document.querySelector('#textbox_id textarea');
+ console.log(textbox)
+ if (navigator.geolocation) {
+ navigator.geolocation.getCurrentPosition(
+ function(position) {
+ var data = {
+ 'latitude': position.coords.latitude,
+ 'longitude': position.coords.longitude,
+ 'accuracy': position.coords.accuracy
+ };
+ console.log("Geolocation data:", data);
+ textbox.value = JSON.stringify(data);
+ textbox.dispatchEvent(new Event('input', { bubbles: true }));
+ },
+ function(error) {
+ var data = {'error': error.message};
+ console.log("Geolocation error:", data);
+ textbox.value = JSON.stringify(data);
+ textbox.dispatchEvent(new Event('input', { bubbles: true }));
+ }
+ );
+ } else {
+ var data = {'error': 'Geolocation is not supported by this browser.'};
+ console.log("Geolocation unsupported:", data);
+ textbox.value = JSON.stringify(data);
+ textbox.dispatchEvent(new Event('input', { bubbles: true }));
+ }
+ }
+"""
+
+def display_location(location_json):
+ return location_json
\ No newline at end of file
diff --git a/app/geolocalisation/maps.py b/app/geolocalisation/maps.py
new file mode 100644
index 0000000000000000000000000000000000000000..70af4eff68830a007b34bb979caa0158a46a6841
--- /dev/null
+++ b/app/geolocalisation/maps.py
@@ -0,0 +1,50 @@
+from geopy.geocoders import Nominatim
+import gradio as gr
+from validation_submission.add_json import add_data_to_individual
+from geolocalisation.class_geolocalisation import Geolocalisation
+
+
+def create_geolocalisation_object(lat, long, name):
+ try:
+ geolocalisation = Geolocalisation(
+ longitude={"type": "longitude", "value": long},
+ latitude={"type": "latitude", "value": lat},
+ name=name
+ )
+ except:
+ print("Pydantic Error for Geolocalisation")
+ return geolocalisation
+
+def save_geolocalisation_to_json(geolocalisation):
+ geo_dict = geolocalisation.dict()
+ add_data_to_individual("geolocalisation", geo_dict)
+
+def get_location(address):
+ try:
+ # calling the Nominatim tool
+ loc = Nominatim(user_agent="GetLoc")
+
+ # entering the location name
+ getLoc = loc.geocode(address)
+
+ # latitude and longitude
+ lat = getLoc.latitude
+ lon = getLoc.longitude
+
+ # Save values
+ geolocalisation = create_geolocalisation_object(lat, lon, address)
+ save_geolocalisation_to_json(geolocalisation)
+
+ #display location processing
+ value = "Latitude = " + str(lat) + "\n" + "Longitude = " + str(lon)
+ identified_location= gr.Textbox(visible=True, interactive=False,
+ label="Identified GPS Location",
+ value=value)
+ return identified_location
+
+ except:
+ error = "Please try another less precise location."
+ identified_location= gr.Textbox(visible=True, interactive=False,
+ label="Identified GPS Location",
+ value=error)
+ return identified_location
\ No newline at end of file
diff --git a/app/gradio_test/test_selectdata_event.py b/app/gradio_test/test_selectdata_event.py
new file mode 100644
index 0000000000000000000000000000000000000000..3e6d0e5e935dc4b9cdf4397c65e1a1413126c5bc
--- /dev/null
+++ b/app/gradio_test/test_selectdata_event.py
@@ -0,0 +1,16 @@
+import gradio as gr
+
+with gr.Blocks() as demo:
+ table = gr.Dataframe([[1, 2, 3], [4, 5, 6]])
+ #gallery = gr.Gallery([("cat.jpg", "Cat"), ("dog.jpg", "Dog")])
+ textbox = gr.Textbox("Hello World!")
+ statement = gr.Textbox()
+
+ def on_select(evt: gr.SelectData):
+ return gr.Textbox(f"You selected {evt.value} at {evt.index} from {evt.target}")
+
+ table.select(on_select, inputs=[table], outputs=[statement])
+ #gallery.select(on_select, gallery, statement)
+ textbox.select(on_select, inputs=[textbox], outputs=[statement])
+
+demo.launch(server_name="0.0.0.0", server_port=3131)
\ No newline at end of file
diff --git a/app/gradio_test/tests_delete_gallery.py b/app/gradio_test/tests_delete_gallery.py
new file mode 100644
index 0000000000000000000000000000000000000000..d3cb1f8281e4ed8393e01dc4c60c621bb0749d9a
--- /dev/null
+++ b/app/gradio_test/tests_delete_gallery.py
@@ -0,0 +1,25 @@
+import gradio as gr
+
+# Example initial image list
+images = [
+ "https://via.placeholder.com/150/0000FF",
+ "https://via.placeholder.com/150/FF0000",
+ "https://via.placeholder.com/150/00FF00"
+]
+
+# Function to remove a selected image from the gallery
+def delete_image(selected_image, image_list):
+ if selected_image in image_list:
+ image_list.remove(selected_image) # Remove the selected image
+ return image_list # Return the updated image list
+
+# Gradio app
+with gr.Blocks() as demo:
+ gallery = gr.Gallery(value=images, label="Gallery") # Gallery of images
+ selected_image = gr.Dropdown(choices=images, label="Select Image to Delete") # Dropdown for selection
+ delete_button = gr.Button("Delete Selected Image") # Button to delete
+
+ # When button is clicked, delete the selected image and update gallery
+ delete_button.click(fn=delete_image, inputs=[selected_image, gallery], outputs=gallery)
+
+demo.launch(server_name="0.0.0.0", server_port=3232)
\ No newline at end of file
diff --git a/app/main.py b/app/main.py
new file mode 100644
index 0000000000000000000000000000000000000000..4be3fade10226fd378ce934fa6f40dd6a1dcc327
--- /dev/null
+++ b/app/main.py
@@ -0,0 +1,387 @@
+import gradio as gr
+from gradio_modal import Modal
+
+from validation_submission.create_json import create_json_all_individuals, create_json_one_individual, create_tmp, reset_json
+from validation_submission.add_json import add_data_to_individual
+from validation_submission.validation import reset_error_box
+from display import save_display_individual
+from geolocalisation.maps import get_location
+from functools import partial
+from dead import show_section_dead
+from wounded import show_section_wounded
+from circumstances.circumstances import show_circumstances
+from circumstances.circumstances_dropdowns import *
+from physical.physical_select_animal import show_physical, find_bounding_box
+from physical.physical_checkbox import on_select_body_part, hide_physical
+from behavior.behavior_checkbox import show_behavior, on_select_behavior
+from follow_up.followup_events import save_fe
+from styling.style import *
+from styling.theme import css
+
+from geolocalisation.js_geolocation import js_geocode, display_location
+
+# with gr.Blocks(theme=theme, css=css) as demo:
+with gr.Blocks(theme='shivi/calm_seafoam') as demo:
+#with gr.Blocks() as demo:
+ create_json_all_individuals()
+ # ---------------------------------------------------------
+ # Intro Text
+ with gr.Row():
+ with gr.Column(scale=1):
+ title = gr.Markdown("# Welcome to Digiwild", label="Title")
+ description = gr.Markdown("Please record your wildlife observations here !", label="description")
+ with gr.Row():
+ show_modal = gr.Button("Add an Animal", scale=3)
+ submit_button = gr.Button("Submit All Animals", scale=1)
+ df = gr.Dataframe(headers=["Identifier", "Location", "Wounded", "Dead"], visible=False, interactive=False)
+ gallery = gr.Gallery(
+ label="Gallery of Records", elem_id="gallery",
+ columns=[1], rows=[1],
+ object_fit="contain", height="auto", interactive=False)
+
+ with Modal(visible=False) as modal:
+ # ---------------------------------------------------------
+ # Intro Text
+ with gr.Row():
+ with gr.Column(scale=1):
+ title = gr.Markdown("# Animal Report", label="Title")
+ description = gr.Markdown("Please record your observation here.", label="description")
+
+ # ---------------------------------------------------------
+ # Camera
+ with gr.Row():
+ def save_image(camera):
+ add_data_to_individual("image", camera.tolist())
+
+ camera = gr.Image(elem_id="image")
+ camera.input(save_image, inputs=[camera])
+ # ---------------------------------------------------------
+ # Location
+ #with gr.Row():
+ with gr.Column(scale=1):
+ gr.Markdown("### Location")
+ gr.Markdown("#### Location (Using address)")
+ location = gr.Textbox(visible=True, interactive=True, label="Location of Sighting")
+ #display location processing
+ identified_location= gr.Textbox(visible=False, interactive=False,
+ label="Identified GPS Location")
+ with gr.Row():
+ #to submit it
+ submit_location = gr.Button("Get Coordinates using address",
+ visible=True, interactive=True, scale=3)
+ submit_location.click(get_location, inputs=[location], outputs=[identified_location])
+ #to clear it
+ clear_location = gr.ClearButton(components=[location, identified_location],
+ visible=True, interactive=True, scale=1
+ )
+ clear_location.click()
+
+ # Geolocation
+ gr.Markdown("#### Location (Using GPS)")
+ location_data = gr.JSON(label="Identified GPS Location")
+ hidden_input = gr.Textbox(visible=False, elem_id="textbox_id")
+ btn_gpslocation = gr.Button("Get Coordinates using GPS (Permission required)")
+ btn_gpslocation.click(None, [], [], js=js_geocode)
+ hidden_input.change(display_location, inputs=hidden_input, outputs=location_data)
+
+
+ # Introducing text_box for Species
+ gr.Markdown("### General details")
+ with gr.Row():
+ specie = gr.Textbox(
+ label="Species (if known)",
+ placeholder="e.g. European Robin, Common Blackbird",
+ info="Enter the species name if you can identify it. If unsure, provide your best guess or general description (e.g. 'small brown bird')",
+ visible=True,
+ interactive=True
+ )
+
+ # Number of individuals
+ with gr.Row():
+ num_individuals = gr.Number(
+ label="Number of Individuals",
+ value=1, # Default value
+ minimum=1,
+ precision=0, # Only whole numbers
+ info="Enter the number of animals observed",
+ #placeholder="Enter number...",
+ visible=True,
+ interactive=True
+ )
+
+ # Introducing text_box for comments
+ with gr.Row():
+ comments = gr.TextArea(
+ label="Additional Comments",
+ placeholder="Enter any additional observations or notes about the sighting...",
+ info="Optional: Add any relevant details about the animal(s) or circumstances",
+ lines=3,
+ max_lines=5,
+ visible=True,
+ interactive=True
+ )
+
+
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # Dead and Wounded Buttons
+ gr.Markdown("## The State of the Animal", label="Title")
+ gr.Markdown("Please tell us if the animal was wounded / sick or dead.", label="description")
+ with gr.Row() as block_form:
+ with gr.Column(scale=1):
+ butt_wounded = gr.Button("Wounded / Sick", elem_id="wounded")
+ with gr.Column(scale=1):
+ butt_dead = gr.Button("Dead", elem_id="dead")
+
+ # ---------------------------------------------------------
+ # Initiate sections
+ section_dead, radio_circumstance_dead, radio_physical_dead,\
+ button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead, \
+ dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead, \
+ physical_boxes_dead, \
+ checkbox_beak_dead, text_beak_dead, checkbox_body_dead, text_body_dead, checkbox_feathers_dead, text_feathers_dead, checkbox_head_dead, text_head_dead, checkbox_legs_dead, text_legs_dead, \
+ fe_collection_dropdown_dead, fe_recepient_dropdown_dead, fe_radio_dropdown_dead, fe_answer_dropdown_dead, \
+ fe_name_recipient_dead, fe_collection_ref_dead \
+ = show_section_dead(False)
+ section_wounded, radio_circumstance_wounded, radio_behavior_wounded, radio_physical_wounded, \
+ button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded, \
+ dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded, \
+ behavior_checkbox, behavior_text, \
+ physical_boxes_wounded, \
+ checkbox_beak_wounded, text_beak_wounded, checkbox_body_wounded, text_body_wounded, checkbox_feathers_wounded, text_feathers_wounded, checkbox_head_wounded, text_head_wounded, checkbox_legs_wounded, text_legs_wounded, \
+ fe_collection_dropdown_wounded, fe_recepient_dropdown_wounded, fe_radio_dropdown_wounded, fe_answer_dropdown_wounded, \
+ fe_name_recipient_wounded, fe_collection_ref_wounded \
+ = show_section_wounded(False)
+
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # Dead Button Logic
+ partial_show_section_dead = partial(show_section_dead, True)
+ partial_hide_section_wounded = partial(show_section_wounded, False)
+ butt_dead.click(partial_show_section_dead,
+ inputs=None,
+ outputs=[section_dead,
+ radio_circumstance_dead, radio_physical_dead,
+ button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead,
+ dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead, \
+ physical_boxes_dead, \
+ checkbox_beak_dead, text_beak_dead, checkbox_body_dead, text_body_dead, checkbox_feathers_dead, text_feathers_dead, checkbox_head_dead, text_head_dead, checkbox_legs_dead, text_legs_dead, \
+ fe_collection_dropdown_dead, fe_recepient_dropdown_dead, fe_radio_dropdown_dead, fe_answer_dropdown_dead, \
+ fe_name_recipient_dead, fe_collection_ref_dead \
+ ])
+ butt_dead.click(partial_hide_section_wounded,
+ inputs=None,
+ outputs=[section_wounded,
+ radio_circumstance_wounded, radio_behavior_wounded, radio_physical_wounded,
+ button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded,
+ dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded,
+ behavior_checkbox, behavior_text,
+ physical_boxes_wounded, \
+ checkbox_beak_wounded, text_beak_wounded, checkbox_body_wounded, text_body_wounded, checkbox_feathers_wounded, text_feathers_wounded, checkbox_head_wounded, text_head_wounded, checkbox_legs_wounded, text_legs_wounded, \
+ fe_collection_dropdown_wounded, fe_recepient_dropdown_wounded, fe_radio_dropdown_wounded, fe_answer_dropdown_wounded, \
+ fe_name_recipient_wounded, fe_collection_ref_wounded \
+ ])
+
+ # ---------------------------------------------------------
+ # Wounded Button Logic
+ partial_show_section_wounded = partial(show_section_wounded, True)
+ partial_hide_section_dead = partial(show_section_dead, False)
+
+ butt_wounded.click(partial_show_section_wounded,
+ inputs=None,
+ outputs=[section_wounded,
+ radio_circumstance_wounded, radio_behavior_wounded, radio_physical_wounded,
+ button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded,
+ dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded,
+ behavior_checkbox, behavior_text,
+ physical_boxes_wounded, \
+ checkbox_beak_wounded, text_beak_wounded, checkbox_body_wounded, text_body_wounded, checkbox_feathers_wounded, text_feathers_wounded, checkbox_head_wounded, text_head_wounded, checkbox_legs_wounded, text_legs_wounded, \
+ fe_collection_dropdown_wounded, fe_recepient_dropdown_wounded, fe_radio_dropdown_wounded, fe_answer_dropdown_wounded, \
+ fe_name_recipient_wounded, fe_collection_ref_wounded \
+ ])
+ butt_wounded.click(partial_hide_section_dead, inputs=None, outputs=[section_dead,
+ radio_circumstance_dead, radio_physical_dead,
+ button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead,
+ dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead, \
+ physical_boxes_dead, \
+ checkbox_beak_dead, text_beak_dead, checkbox_body_dead, text_body_dead, checkbox_feathers_dead, text_feathers_dead, checkbox_head_dead, text_head_dead, checkbox_legs_dead, text_legs_dead, \
+ fe_collection_dropdown_dead, fe_recepient_dropdown_dead, fe_radio_dropdown_dead, fe_answer_dropdown_dead, \
+ fe_name_recipient_dead, fe_collection_ref_dead \
+ ])
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # DEAD
+ # ---------------------------------------------------------
+ # Radio Circumstance Dead
+ radio_circumstance_dead.change(fn=show_circumstances,
+ inputs=[radio_circumstance_dead],
+ outputs=[button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead,
+ dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead]
+ )
+
+ # Dropdowns Dead
+ button_collision_dead.click(dropdown_collision,
+ outputs=[dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead])
+ button_deliberate_destruction_dead.click(dropdown_deliberate_destruction, outputs=[dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead])
+ button_indirect_destruction_dead.click(dropdown_indirect_destruction, outputs=[dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead])
+ button_natural_cause_dead.click(dropdown_natural_cause, outputs=[dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead])
+
+ dropdown_dead.select(on_select, None, [dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead])
+ dropdown_level2_dead.select(on_select_dropdown_level2)
+ openfield_level2_dead.change(on_change_openfield_level2, inputs=[openfield_level2_dead])
+ dropdown_extra_level2_dead.select(on_select_dropdown_extra_level2)
+ # ---------------------------------------------------------
+ # Radio Physical Dead
+ radio_physical_dead.change(fn=show_physical,
+ inputs=[radio_physical_dead, gr.Text("dead", visible=False)],
+ outputs=[physical_boxes_dead])
+
+ # Checkbox Physical Dead
+ physical_boxes_dead.select(find_bounding_box,
+ inputs=[physical_boxes_dead, gr.Textbox(value="dead", visible=False)],
+ outputs=[checkbox_beak_dead, text_beak_dead,
+ checkbox_body_dead, text_body_dead,
+ checkbox_feathers_dead, text_feathers_dead,
+ checkbox_head_dead, text_head_dead,
+ checkbox_legs_dead, text_legs_dead
+ ])
+ checkbox_beak_dead.select(on_select_body_part, inputs=[checkbox_beak_dead, gr.Text("beak", visible=False)])
+ checkbox_body_dead.select(on_select_body_part, inputs=[checkbox_body_dead, gr.Text("body", visible=False)])
+ checkbox_feathers_dead.select(on_select_body_part, inputs=[checkbox_feathers_dead, gr.Text("feathers", visible=False)])
+ checkbox_head_dead.select(on_select_body_part, inputs=[checkbox_head_dead, gr.Text("head", visible=False)])
+ checkbox_legs_dead.select(on_select_body_part, inputs=[checkbox_legs_dead, gr.Text("legs", visible=False)])
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # ---------------------------------------------------------
+ # WOUNDED
+ # ---------------------------------------------------------
+ # Radio Circumstance Wounded
+ radio_circumstance_wounded.change(fn=show_circumstances,
+ inputs=[radio_circumstance_wounded],
+ outputs=[button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded,
+ dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded]
+ )
+
+ # Dropdowns Circumstance Wounded
+ button_collision_wounded.click(dropdown_collision,
+ outputs=[dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
+ button_deliberate_destruction_wounded.click(dropdown_deliberate_destruction, outputs=[dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
+ button_indirect_destruction_wounded.click(dropdown_indirect_destruction, outputs=[dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
+ button_natural_cause_wounded.click(dropdown_natural_cause, outputs=[dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
+
+ dropdown_wounded.select(on_select, None, [dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded])
+ dropdown_level2_wounded.select(on_select_dropdown_level2)
+ openfield_level2_wounded.change(on_change_openfield_level2, inputs=[openfield_level2_wounded])
+ dropdown_extra_level2_wounded.select(on_select_dropdown_extra_level2)
+ # ---------------------------------------------------------
+ # Radio Behavior Wounded
+ radio_behavior_wounded.change(fn=show_behavior,
+ inputs=[radio_behavior_wounded, gr.Text("wounded / sick", visible=False)],
+ outputs=[behavior_checkbox, behavior_text])
+ behavior_checkbox.select(on_select_behavior,
+ inputs=[behavior_checkbox])
+ # ---------------------------------------------------------
+ # Radio Physical Wounded
+ radio_physical_wounded.change(fn=show_physical,
+ inputs=[radio_physical_wounded, gr.Text("wounded / sick", visible=False)],
+ outputs=[physical_boxes_wounded])
+
+ # Checkbox Physical Wounded
+ physical_boxes_wounded.select(find_bounding_box,
+ inputs=[physical_boxes_wounded, gr.Textbox(value="wounded / sick", visible=False)],
+ outputs=[checkbox_beak_wounded, text_beak_wounded,
+ checkbox_body_wounded, text_body_wounded,
+ checkbox_feathers_wounded, text_feathers_wounded,
+ checkbox_head_wounded, text_head_wounded,
+ checkbox_legs_wounded, text_legs_wounded
+ ])
+ checkbox_beak_wounded.select(on_select_body_part, inputs=[checkbox_beak_wounded, gr.Text("beak", visible=False)])
+ checkbox_body_wounded.select(on_select_body_part, inputs=[checkbox_body_wounded, gr.Text("body", visible=False)])
+ checkbox_feathers_wounded.select(on_select_body_part, inputs=[checkbox_feathers_wounded, gr.Text("feathers", visible=False)])
+ checkbox_head_wounded.select(on_select_body_part, inputs=[checkbox_head_wounded, gr.Text("head", visible=False)])
+ checkbox_legs_wounded.select(on_select_body_part, inputs=[checkbox_legs_wounded, gr.Text("legs", visible=False)])
+
+ # ---------------------------------------------------------
+ # Follow Up Events Wounded
+ fe_collection_dropdown_wounded.select(save_fe, inputs=[fe_collection_dropdown_wounded, gr.Textbox("animal collected", visible=False)])
+ fe_recepient_dropdown_wounded.select(save_fe, inputs=[fe_recepient_dropdown_wounded, gr.Textbox("recipient", visible=False)])
+ fe_radio_dropdown_wounded.select(save_fe, inputs=[fe_radio_dropdown_wounded, gr.Textbox("radiography", visible=False)])
+ fe_answer_dropdown_wounded.select(save_fe, inputs=[fe_answer_dropdown_wounded, gr.Textbox("given answer", visible=False)])
+ fe_name_recipient_wounded.input(save_fe, inputs=[fe_name_recipient_wounded, gr.Textbox("recipient name", visible=False)])
+ fe_collection_ref_wounded.input(save_fe, inputs=[fe_collection_ref_wounded, gr.Textbox("collection reference", visible=False)])
+
+ # ---------------------------------------------------------
+ # Follow Up Events Dead
+ fe_collection_dropdown_dead.select(save_fe, inputs=[fe_collection_dropdown_dead, gr.Textbox("animal collected", visible=False)])
+ fe_recepient_dropdown_dead.select(save_fe, inputs=[fe_recepient_dropdown_dead, gr.Textbox("recipient", visible=False)])
+ fe_radio_dropdown_dead.select(save_fe, inputs=[fe_radio_dropdown_dead, gr.Textbox("radiography", visible=False)])
+ fe_answer_dropdown_dead.select(save_fe, inputs=[fe_answer_dropdown_dead, gr.Textbox("given answer", visible=False)])
+ fe_name_recipient_dead.input(save_fe, inputs=[fe_name_recipient_dead, gr.Textbox("recipient name", visible=False)])
+ fe_collection_ref_dead.input(save_fe, inputs=[fe_collection_ref_dead, gr.Textbox("collection reference", visible=False)])
+
+ # ---------------------------------------------------------
+ # Error Box
+ error_box = gr.Text(value=None, visible=False)
+
+ # ---------------------------------------------------------
+ # Add One Individual's Data to the Dataframe
+ # And Allow clearing of all previous output
+ with gr.Row():
+ button_df = gr.Button("Submit Animal Report", scale = 3)
+ button_clear = gr.ClearButton(scale = 1,
+ components=[
+ camera,
+ location, identified_location,
+ #dead reset
+ radio_circumstance_dead, radio_physical_dead,
+ button_collision_dead, button_deliberate_destruction_dead, button_indirect_destruction_dead, button_natural_cause_dead,
+ dropdown_dead, dropdown_level2_dead, openfield_level2_dead, dropdown_extra_level2_dead,
+ physical_boxes_dead,
+ checkbox_beak_dead, text_beak_dead, checkbox_body_dead, text_body_dead, checkbox_feathers_dead, text_feathers_dead, checkbox_head_dead, text_head_dead, checkbox_legs_dead, text_legs_dead,
+ fe_collection_dropdown_dead, fe_recepient_dropdown_dead, fe_radio_dropdown_dead, fe_answer_dropdown_dead,
+ fe_name_recipient_dead, fe_collection_ref_dead,
+ #wounded reset
+ radio_circumstance_wounded, radio_behavior_wounded, radio_physical_wounded,
+ button_collision_wounded, button_deliberate_destruction_wounded, button_indirect_destruction_wounded, button_natural_cause_wounded,
+ dropdown_wounded, dropdown_level2_wounded, openfield_level2_wounded, dropdown_extra_level2_wounded,
+ behavior_checkbox, behavior_text,
+ physical_boxes_wounded,
+ checkbox_beak_wounded, text_beak_wounded, checkbox_body_wounded, text_body_wounded, checkbox_feathers_wounded, text_feathers_wounded, checkbox_head_wounded, text_head_wounded, checkbox_legs_wounded, text_legs_wounded,
+ fe_collection_dropdown_wounded, fe_recepient_dropdown_wounded, fe_radio_dropdown_wounded, fe_answer_dropdown_wounded,
+ fe_name_recipient_wounded, fe_collection_ref_wounded,
+ error_box
+ ])
+ button_close = gr.Button("Back to Display", scale = 1)
+
+
+ # ---------------------------------------------------------
+ # Button Click Logic
+ button_clear.click()
+ button_clear.click(hide_physical,
+ outputs=[checkbox_beak_wounded, text_beak_wounded, checkbox_body_wounded, text_body_wounded, checkbox_feathers_wounded, text_feathers_wounded, checkbox_head_wounded, text_head_wounded, checkbox_legs_wounded, text_legs_wounded])
+ button_clear.click(hide_physical,
+ outputs=[checkbox_beak_dead, text_beak_dead, checkbox_body_dead, text_body_dead, checkbox_feathers_dead, text_feathers_dead, checkbox_head_dead, text_head_dead, checkbox_legs_dead, text_legs_dead])
+
+ button_clear.click(reset_error_box, inputs=[error_box], outputs=[error_box])
+ button_clear.click(reset_json)
+
+ button_df.click(save_display_individual,
+ inputs=[gallery, df, error_box],
+ outputs=[gallery, df, error_box]
+ )
+ button_close.click(lambda: Modal(visible=False), None, modal)
+
+ # ---------------------------------------------------------
+ # Event Functions of the landing page buttons
+ show_modal.click(lambda: Modal(visible=True), None, modal)
+ show_modal.click(create_json_one_individual)
+ show_modal.click(create_tmp)
+ #submit_button.click(save_and_rest_df, inputs=[df], outputs=[df])
+
+
+if __name__ == "__main__":
+ demo.launch(server_name="0.0.0.0", server_port=7860)
\ No newline at end of file
diff --git a/app/physical/__init__.py b/app/physical/__init__.py
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diff --git a/app/physical/__pycache__/physical_select_animal.cpython-312.pyc b/app/physical/__pycache__/physical_select_animal.cpython-312.pyc
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diff --git a/app/physical/class_physical.py b/app/physical/class_physical.py
new file mode 100644
index 0000000000000000000000000000000000000000..e8e5b45eae97b9d3d93a8563e7e8a8da6b401aa3
--- /dev/null
+++ b/app/physical/class_physical.py
@@ -0,0 +1,79 @@
+from pydantic import BaseModel, Field
+from typing import Literal, List, Union, Optional
+
+# Define common anomalies as a Literal type
+CommonAnomalies = Literal[
+ 'blackened/burnt skin',
+ 'blood',
+ 'foreign body',
+ 'fracture',
+ 'injury',
+ 'parasite',
+ 'swelling',
+ 'warty or tumor-like growth, crusts'
+]
+
+# --- Beak-related Anomalies ---
+class BeakAnomaly(BaseModel):
+ type: Literal['beak']
+ anomaly_type: List[Literal[
+ 'adhesion',
+ 'deformation',
+ CommonAnomalies
+ ]]
+
+# --- Body-related Anomalies ---
+class BodyAnomaly(BaseModel):
+ type: Literal['body']
+ anomaly_type: List[Literal[
+ 'emaciation',
+ 'fluffed up',
+ 'stained feathers',
+ CommonAnomalies
+ ]]
+
+# --- Legs-related Anomalies ---
+class LegAnomaly(BaseModel):
+ type: Literal['legs']
+ anomaly_type: List[Literal[
+ 'missing limb',
+ 'deformation',
+ CommonAnomalies
+ ]]
+
+# --- Feathers/Wings/Tail-related Anomalies ---
+class FeathersWingsTailAnomaly(BaseModel):
+ type: Literal['feathers/wings/tail']
+ anomaly_type: List[Literal[
+ 'fluffed up',
+ 'feather abnormalities',
+ 'stained feathers',
+ 'abnormal wing posture',
+ 'missing limb',
+ CommonAnomalies
+ ]]
+
+# --- Head-related Anomalies (including eyes) ---
+class HeadAnomaly(BaseModel):
+ type: Literal['head incl. eyes']
+ anomaly_type: List[Literal[
+ 'ear changes',
+ 'eye changes',
+ 'tilted head',
+ CommonAnomalies
+ ]]
+
+
+# Union of all possible anomaly types for specific body parts
+AnomalyType = Union[
+ BeakAnomaly,
+ BodyAnomaly,
+ LegAnomaly,
+ FeathersWingsTailAnomaly,
+ HeadAnomaly
+]
+
+# Main PhysicalAnomaly class that logs anomalies across different body parts
+class PhysicalAnomalies(BaseModel):
+ physical_radio: str
+ physical_anomalies_type: Optional[List[AnomalyType]] = None
diff --git a/app/physical/physical_boxes_define.py b/app/physical/physical_boxes_define.py
new file mode 100644
index 0000000000000000000000000000000000000000..5c3bedc6069a744366f6700a4dd5359bf7a7ab93
--- /dev/null
+++ b/app/physical/physical_boxes_define.py
@@ -0,0 +1,23 @@
+import geopandas as gpd
+from shapely.geometry import box
+
+bounding_boxes = [
+ # 'Head incl. eyes',
+ box(250, 375, 350, 485),
+ # 'Beak and mouth region',
+ box(200, 450, 250, 485),
+ # 'Feathers/Wings/Tail',
+ box(50, 100, 725, 355),
+ # 'Legs',
+ box(325, 585, 450, 675),
+ # 'Body'
+ box(275, 510, 500, 565)
+]
+
+# Create a GeoDataFrame from these boxes
+gdf = gpd.GeoDataFrame({'geometry': bounding_boxes,
+ 'name': ['Head incl. eyes',
+ 'Beak',
+ 'Feathers/Wings/Tail',
+ 'Legs',
+ 'Body']})
diff --git a/app/physical/physical_boxes_map.py b/app/physical/physical_boxes_map.py
new file mode 100644
index 0000000000000000000000000000000000000000..cf6f62849fc785c05a803c5eada0063bd5804483
--- /dev/null
+++ b/app/physical/physical_boxes_map.py
@@ -0,0 +1,33 @@
+from PIL import Image, ImageDraw, ImageFont
+
+from physical_boxes_define import gdf
+
+from dotenv import load_dotenv
+import os
+load_dotenv()
+PATH_ASSETS = os.getenv('PATH_ASSETS')
+
+# Function to draw the bounding boxes on the image
+def draw_bounding_boxes(image_path, gdf):
+ image = Image.open(image_path+'bird.png').convert("RGB")
+ # Convert the image to an editable format
+ draw = ImageDraw.Draw(image)
+
+ # Optional: Load a font (requires a TTF file)
+ # try:
+ font = ImageFont.truetype(PATH_ASSETS + "fonts/LiberationSans-Regular.ttf",
+ 20)
+ # except IOError:
+ # print("default")
+ # font = ImageFont.load_default()
+
+ # Draw each bounding box on the image
+ for _, row in gdf.iterrows():
+ xmin, ymin, xmax, ymax = row['geometry'].bounds
+ draw.rectangle([xmin, ymin, xmax, ymax], outline="purple", width=2)
+ draw.text((xmin, ymin-22), row['name'], fill="black", font=font)
+
+ image.save(image_path+'bird_boxed.png', "PNG")
+
+if __name__ == "__main__":
+ draw_bounding_boxes(PATH_ASSETS + 'images/', gdf)
\ No newline at end of file
diff --git a/app/physical/physical_checkbox.py b/app/physical/physical_checkbox.py
new file mode 100644
index 0000000000000000000000000000000000000000..b0a505350d0a7a28995050c6ee364f0b7fea89f0
--- /dev/null
+++ b/app/physical/physical_checkbox.py
@@ -0,0 +1,84 @@
+import gradio as gr
+from utils.utils_config import get_custom_config_dropdowns
+from utils.utils_checkbox import create_checkbox
+from validation_submission.add_json import add_data_tmp
+#---------------------------------------------------------
+def get_body_parts():
+ dropdown_config = get_custom_config_dropdowns("config_checkbox_physical.json")
+ return list(dropdown_config.keys())
+
+def retrieve_config_options(label, dropdown_config):
+ options = list(dropdown_config[label].keys())
+ options = [option.title() for option in options]
+ return options
+
+def get_options_description(value):
+ dropdown_config = get_custom_config_dropdowns("config_checkbox_physical.json")
+ # get options
+ options_common = retrieve_config_options("Common", dropdown_config)
+ options_for_value = retrieve_config_options(value, dropdown_config)
+ options_common.extend(options_for_value)
+ options = options_common
+ # get descriptions
+ descriptions = []
+ for key, sub_dict in dropdown_config.items():
+ if key==value or key=="Common":
+ for _, option_dict in sub_dict.items():
+ for description_tag, description in option_dict.items():
+ if "Description"==description_tag:
+ descriptions.append(description)
+ return options, descriptions
+
+#---------------------------------------------------------
+def create_checkbox_beak(section, label_checkbox, visible):
+ body_part="Beak"
+ options, descriptions = get_options_description(body_part)
+ return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
+
+def create_checkbox_body(section, label_checkbox, visible):
+ body_part="Body"
+ options, descriptions = get_options_description(body_part)
+ return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
+
+def create_checkbox_feathers(section, label_checkbox, visible):
+ body_part="Feathers/Wings/Tail"
+ options, descriptions = get_options_description(body_part)
+ return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
+
+def create_checkbox_head(section, label_checkbox, visible):
+ body_part="Head incl. eyes"
+ options, descriptions = get_options_description(body_part)
+ return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
+
+def create_checkbox_legs(section, label_checkbox, visible):
+ body_part="Legs"
+ options, descriptions = get_options_description(body_part)
+ return create_checkbox(body_part, section, label_checkbox, visible, options, descriptions)
+
+#---------------------------------------------------------
+def process_body_parts(section, matched_box):
+ #take all except "Common"
+ body_parts = get_body_parts()
+ body_parts = body_parts[1:]
+ label_checkbox = "Physical changes to "
+ visibles = [True if matched_box==body_part else False for body_part in body_parts ]
+ checkbox_beak, text_beak = create_checkbox_beak(section, label_checkbox, visibles[0])
+ checkbox_body, text_body = create_checkbox_body(section, label_checkbox, visibles[1])
+ checkbox_feathers, text_feathers = create_checkbox_feathers(section, label_checkbox, visibles[2])
+ checkbox_head, text_head = create_checkbox_head(section, label_checkbox, visibles[3])
+ checkbox_legs, text_legs = create_checkbox_legs(section, label_checkbox, visibles[4])
+ return checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
+
+#---------------------------------------------------------
+
+def on_select_body_part(body_part_checkbox, body_part):
+ add_data_tmp("wounded_dead", "physical_type_"+body_part.lower(), body_part.lower())
+ body_part_checkbox = [body_part_check.lower() for body_part_check in body_part_checkbox]
+ add_data_tmp("wounded_dead", "physical_anomaly_"+body_part.lower(), body_part_checkbox)
+
+#---------------------------------------------------------
+
+def hide_physical():
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs = process_body_parts("wounded", "None")
+ return checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
+
\ No newline at end of file
diff --git a/app/physical/physical_select_animal.py b/app/physical/physical_select_animal.py
new file mode 100644
index 0000000000000000000000000000000000000000..f78ccd7be3060beac58e91e29b3abeb391c42505
--- /dev/null
+++ b/app/physical/physical_select_animal.py
@@ -0,0 +1,50 @@
+import gradio as gr
+from dotenv import load_dotenv
+import os
+from typing import List
+from shapely.geometry import Point
+
+from physical.physical_checkbox import *
+from physical.physical_boxes_define import gdf
+from utils.utils_visible import set_visible
+
+load_dotenv()
+PATH_ASSETS = os.getenv('PATH_ASSETS')
+
+# Function to find the matching bounding box for a given point and return the image with boxes
+def find_bounding_box(evt: gr.SelectData, img, section: str):
+ x, y = evt.index[0], evt.index[1]
+ point = Point(x, y)
+ match = gdf[gdf.contains(point)]
+ if not match.empty:
+ matched_box = match.iloc[0]['name']
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs = process_body_parts(section, matched_box)
+ else:
+ matched_box = None
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs = process_body_parts(section, matched_box)
+ return checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs
+
+
+
+# Gradio app
+def create_bird_anatomy(visible, section: str):
+ # Draw bounding boxes on the image
+ print
+ img_with_boxes = gr.Image(value=PATH_ASSETS+'images/bird_boxed.png',
+ show_label=False,
+ height="600px",
+ elem_id=section,
+ visible=visible)
+ return img_with_boxes
+
+def show_physical(choice, section: str):
+ visible = set_visible(choice)
+ physical_boxes = create_bird_anatomy(visible, section)
+ add_data_tmp("wounded_dead", "physical_radio", choice)
+ return physical_boxes
+
+
+
+
+
+
diff --git a/app/styling/__init__.py b/app/styling/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/app/styling/__pycache__/__init__.cpython-312.pyc b/app/styling/__pycache__/__init__.cpython-312.pyc
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diff --git a/app/styling/__pycache__/style.cpython-312.pyc b/app/styling/__pycache__/style.cpython-312.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..78a4b240822362fbe83b136777a3494f0995cd34
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diff --git a/app/styling/__pycache__/theme.cpython-312.pyc b/app/styling/__pycache__/theme.cpython-312.pyc
new file mode 100644
index 0000000000000000000000000000000000000000..7416af202499b8ac9df2b4aace63d4a2d3876597
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diff --git a/app/styling/style.py b/app/styling/style.py
new file mode 100644
index 0000000000000000000000000000000000000000..58d84358e4364a3c19ce3f9b89725a7923972cc5
--- /dev/null
+++ b/app/styling/style.py
@@ -0,0 +1,37 @@
+import gradio as gr
+
+gr.HTML('''
+ <style>
+ # .custom-button {
+ # background-color: #3B4C54;
+ # border: none;
+ # color: white;
+ # padding: 15px 32px;
+ # text-align: center;
+ # text-decoration: none;
+ # display: inline-block;
+ # font-size: 16px;
+ # margin: 4px 2px;
+ # cursor: pointer;
+ # border-radius: 8px;
+ # }
+ </style>
+ ''')
+
+# gr.HTML('''
+# <style>
+# .custom-button {
+# background-color: #4CAF50; /* Green */
+# border: none;
+# color: white;
+# padding: 15px 32px;
+# text-align: center;
+# text-decoration: none;
+# display: inline-block;
+# font-size: 16px;
+# margin: 4px 2px;
+# cursor: pointer;
+# border-radius: 8px;
+# }
+# </style>
+# ''')
\ No newline at end of file
diff --git a/app/styling/theme.py b/app/styling/theme.py
new file mode 100644
index 0000000000000000000000000000000000000000..553e77112fd3c43e10877d69f87e8eafa194e008
--- /dev/null
+++ b/app/styling/theme.py
@@ -0,0 +1,105 @@
+import gradio as gr
+
+css= ""
+css_old = """
+.gradio-container {background: url(https://openclipart.org/image/2000px/279687)}
+
+/* Main background */
+body {
+ background-color: #3B4C54;
+ color: #ffffff; /* Set default text color for contrast */
+}
+
+/* Secondary color for headers and panels */
+.gradio-container .card,
+.gradio-container h1,
+.gradio-container h2,
+.gradio-container h3,
+.gradio-container h4 {
+ background-color: #3F543B;
+ color: #ffffff; /* Ensuring text is readable */
+}
+
+
+
+
+/* Background color for the wounded section */
+#wounded {
+ background-color: #503B54;
+ color: #ffffff; /* Ensures text is readable */
+}
+
+/* Olive green color for headers within the wounded section */
+#wounded h1,
+#wounded h2,
+#wounded h3,
+#wounded h4,
+#wounded h5,
+#wounded h6 {
+ color: #ffffff; /* Olive green color for header text */
+ background-color: #503B54; /* No background color for headers */
+}
+
+/* Styling dropdowns within the wounded section */
+#wounded select {
+ background-color: #3F543B; /* Olive green background */
+ color: #ffffff; /* Ensures text is readable */
+ border: 1px solid #3B4C54; /* Optional border for consistency */
+}
+
+/* Styling checkboxes within the wounded section */
+#wounded input[type="checkbox"] {
+ accent-color: #3F543B; /* Olive green color for the checkbox */
+}
+
+/* Additional checkbox label styling if needed */
+#wounded label {
+ color: #ffffff; /* Ensures labels are readable */
+}
+
+
+
+
+
+/* Background color for the dead section */
+#dead {
+ background-color: #54433B;
+ color: #ffffff; /* Ensures text is readable */
+}
+
+/* Brown color for headers within the dead section */
+#dead h1,
+#dead h2,
+#dead h3,
+#dead h4,
+#dead h5,
+#dead h6 {
+ color: #ffffff; /* Olive green color for header text */
+ background-color: #54433B; /* No background color for headers */
+}
+
+
+#bird-boxes {background-color: #3B4C54}
+#submit {background-color: #abb2bf}
+#error {background-color: #e82323}
+#valid {background-color: #07e63f}
+"""
+
+# OLD THEME:
+
+# css = """
+# .gradio-container {background: url(https://openclipart.org/image/2000px/279687)}
+# #image {background-color: #73b9ae}
+# #dead {background-color: #333333}
+# #wounded {background-color: #5e0724}
+# #bird-boxes {background-color: #f2f3f3}
+# #buttons-conditions {background-color: #b3b3b3}
+# #dropdown-conditions {background-color: #b3b3b3}
+# #followup {background-color: #38241c}
+# #submit {background-color: #abb2bf}
+# #error {background-color: #e82323}
+# #valid {background-color: #07e63f}
+# """
+
+# theme = gr.themes.Soft(primary_hue="teal", secondary_hue="teal", neutral_hue="emerald",
+# font=[gr.themes.GoogleFont("Inconsolata"), "Arial", "sans-serif"])
diff --git a/app/utils/__init__.py b/app/utils/__init__.py
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diff --git a/app/utils/__pycache__/utils_config.cpython-312.pyc b/app/utils/__pycache__/utils_config.cpython-312.pyc
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diff --git a/app/utils/__pycache__/utils_visible.cpython-312.pyc b/app/utils/__pycache__/utils_visible.cpython-312.pyc
new file mode 100644
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diff --git a/app/utils/utils_checkbox.py b/app/utils/utils_checkbox.py
new file mode 100644
index 0000000000000000000000000000000000000000..155cd6c79b9c948f524f517783b8155b6bcc7c8d
--- /dev/null
+++ b/app/utils/utils_checkbox.py
@@ -0,0 +1,18 @@
+import gradio as gr
+
+#---------------------------------------------------------
+def create_checkbox(value, section, label_checkbox, visible, options, descriptions):
+ descriptions_info = "<br><br>".join([f"* **{option}**: {description}" for option, description in zip(options, descriptions)])
+ checkbox = gr.CheckboxGroup(options,
+ label=label_checkbox + f" {value}:",
+ visible=visible,
+ interactive=True,
+ elem_id=section)
+ text = gr.Markdown(descriptions_info,
+ label = "Info",
+ visible=visible,
+ #interactive=False,
+ #lines=13,
+ #max_lines=15,
+ elem_id=section)
+ return checkbox, text
\ No newline at end of file
diff --git a/app/utils/utils_config.py b/app/utils/utils_config.py
new file mode 100644
index 0000000000000000000000000000000000000000..c9231df8f6635a21d690dfe4bafb81a14dc6e04b
--- /dev/null
+++ b/app/utils/utils_config.py
@@ -0,0 +1,20 @@
+import json
+import os
+from dotenv import load_dotenv
+import os
+load_dotenv()
+PATH = os.getcwd() + "/"
+PATH_ASSETS = os.getenv('PATH_ASSETS')
+PATH_CONFIG = PATH + PATH_ASSETS + "config/"
+
+def load_config(file_path):
+ with open(file_path) as f:
+ config = json.load(f)
+ return config
+
+def get_custom_config_dropdowns(config_path):
+ dropdown_config_path = PATH_CONFIG + config_path
+ dropdown_config = load_config(dropdown_config_path)
+ return dropdown_config
+
+
diff --git a/app/utils/utils_visible.py b/app/utils/utils_visible.py
new file mode 100644
index 0000000000000000000000000000000000000000..7651bdea0c85315e2a45c4d154dcb9acd5611b97
--- /dev/null
+++ b/app/utils/utils_visible.py
@@ -0,0 +1,6 @@
+def set_visible(choice):
+ if choice=="Yes":
+ visible = True
+ else:
+ visible=False
+ return visible
\ No newline at end of file
diff --git a/app/validation_submission/__init__.py b/app/validation_submission/__init__.py
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diff --git a/app/validation_submission/__pycache__/submission.cpython-312.pyc b/app/validation_submission/__pycache__/submission.cpython-312.pyc
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index 0000000000000000000000000000000000000000..6260c629ab8eb1085841c4888bfcd16a3e763c3e
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diff --git a/app/validation_submission/__pycache__/validation.cpython-312.pyc b/app/validation_submission/__pycache__/validation.cpython-312.pyc
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diff --git a/app/validation_submission/add_json.py b/app/validation_submission/add_json.py
new file mode 100644
index 0000000000000000000000000000000000000000..c95f4172b7ebccff9b1a6b8c33e41ca7b462f2ba
--- /dev/null
+++ b/app/validation_submission/add_json.py
@@ -0,0 +1,15 @@
+from validation_submission.create_json import create_json_one_individual, create_tmp
+import json
+
+def add_data_to_individual(key, value):
+ with open("data/one_individual.json", 'r') as openfile:
+ one_individual = json.load(openfile)
+ one_individual[key] = value
+ create_json_one_individual(one_individual)
+
+def add_data_tmp(tmp_name, key, value):
+ with open(f"app/assets/tmp_json/tmp_{tmp_name}.json", 'r') as openfile:
+ tmp = json.load(openfile)
+ tmp[key] = value
+ create_tmp(tmp_name, tmp)
+
\ No newline at end of file
diff --git a/app/validation_submission/create_json.py b/app/validation_submission/create_json.py
new file mode 100644
index 0000000000000000000000000000000000000000..a538d6e7dba604f3d1cb7672f0a19629e74e1761
--- /dev/null
+++ b/app/validation_submission/create_json.py
@@ -0,0 +1,20 @@
+import json
+
+def create_json_one_individual(one_individual={}):
+ one_individual = json.dumps(one_individual)
+ with open("data/one_individual.json", "w") as outfile:
+ outfile.write(one_individual)
+
+def create_json_all_individuals(all_individuals={}):
+ all_individuals = json.dumps(all_individuals)
+ with open("data/all_individuals.json", "w") as outfile:
+ outfile.write(all_individuals)
+
+def create_tmp(tmp_name="wounded_dead", tmp={}):
+ tmp = json.dumps(tmp)
+ with open(f"app/assets/tmp_json/tmp_{tmp_name}.json", "w") as outfile:
+ outfile.write(tmp)
+
+def reset_json():
+ create_json_one_individual()
+ create_tmp()
\ No newline at end of file
diff --git a/app/validation_submission/get_json.py b/app/validation_submission/get_json.py
new file mode 100644
index 0000000000000000000000000000000000000000..03d77d8d4e8b69eaabdb3e21fafc4fb22a3d458e
--- /dev/null
+++ b/app/validation_submission/get_json.py
@@ -0,0 +1,16 @@
+import json
+
+def get_json_one_individual():
+ with open("data/one_individual.json", 'r') as openfile:
+ one_individual = json.load(openfile)
+ return one_individual
+
+def get_json_all_individuals():
+ with open("data/all_individuals.json", "r") as openfile:
+ all_individuals = json.load(openfile)
+ return all_individuals
+
+def get_json_tmp(tmp_name):
+ with open(f"app/assets/tmp_json/tmp_{tmp_name}.json", "r") as openfile:
+ tmp_json = json.load(openfile)
+ return tmp_json
\ No newline at end of file
diff --git a/app/validation_submission/processing.py b/app/validation_submission/processing.py
new file mode 100644
index 0000000000000000000000000000000000000000..a47051bbc6c84a3dafb6031d53553e530d121cf2
--- /dev/null
+++ b/app/validation_submission/processing.py
@@ -0,0 +1,55 @@
+#### PROCESS FUNCTIONS
+
+def process_circumstance(data):
+ fields_to_check = ["option_dropdown", "open_field", "extra"]
+ if data["circumstance_radio"] == "Yes":
+ for field in fields_to_check:
+ if data["circumstance_type"][field+"_label"] == "NA":
+ data["circumstance_type"].pop(field+"_label")
+ else :
+ val = data[f"circumstance_{field}"]
+ key = data["circumstance_type"][field+"_label"]
+ data["circumstance_type"][key] = val
+ data["circumstance_type"].pop(field+"_label")
+ return data
+
+def process_behaviors(data):
+ behaviors =[]
+ if data["behaviors_radio"] == "Yes":
+ for type in data["behaviors_type"]:
+ new_behavior = {}
+ new_behavior["type"] = type
+ behaviors.append(new_behavior)
+ data["behaviors_type"] = behaviors
+ return data
+
+def process_physical(data):
+ body_parts= ["beak", "body", "legs", "feathers/wings/tail", "head incl. eyes"]
+ anomalies=[]
+ reformatted = {}
+ reformatted["physical_radio"] = data["physical_radio"]
+ if data["physical_radio"] == "Yes":
+ for body_part in body_parts:
+ anomaly = {}
+ for key, val in data.items():
+ if "type_"+ body_part in key:
+ anomaly["type"] = body_part
+ elif "anomaly_"+ body_part in key:
+ anomaly["anomaly_type"] = val
+ if anomaly:
+ anomalies.append(anomaly)
+ reformatted["physical_anomalies_type"] = anomalies
+ return reformatted
+
+def process_followup(data):
+ followup_events = []
+ for key, val in data.items():
+ followup_event={}
+ type = key.split("followup")[-1]
+ option = type.split(" ")[-1]
+ followup_event["type"] = type.strip()
+ followup_event[option.strip()] = val
+ followup_events.append(followup_event)
+ reformatted ={}
+ reformatted["follow_up_events"] = followup_events
+ return reformatted
\ No newline at end of file
diff --git a/app/validation_submission/submission.py b/app/validation_submission/submission.py
new file mode 100644
index 0000000000000000000000000000000000000000..313df1e18d0b3bd261f187a6e922f1a333715d9e
--- /dev/null
+++ b/app/validation_submission/submission.py
@@ -0,0 +1,17 @@
+import json
+from validation_submission.get_json import get_json_all_individuals
+from validation_submission.validation import validate_individual
+
+def validate_save_individual(error_box):
+ individual, error_box = validate_individual(error_box)
+ if individual:
+ save_to_all_individuals(individual.model_dump())
+ return individual, error_box
+
+def save_to_all_individuals(one_individual):
+ all_individuals = get_json_all_individuals()
+ all_individuals[str(len(all_individuals))] = one_individual
+ all_individuals_for_json = json.dumps(all_individuals)
+ with open("data/all_individuals.json", "w") as outfile:
+ outfile.write(all_individuals_for_json)
+ return all_individuals
\ No newline at end of file
diff --git a/app/validation_submission/validation.py b/app/validation_submission/validation.py
new file mode 100644
index 0000000000000000000000000000000000000000..9e170eabf09df25794f3b0965a62da3855457e6a
--- /dev/null
+++ b/app/validation_submission/validation.py
@@ -0,0 +1,173 @@
+import uuid
+from pydantic import ValidationError
+import gradio as gr
+
+from validation_submission.get_json import get_json_tmp, get_json_one_individual
+from circumstances.class_circumstance import Circumstances
+from behavior.class_behavior import Behaviors
+from physical.class_physical import PhysicalAnomalies
+from follow_up.class_follow_up import FollowUpEvents
+from classes import Report, Wounded, Dead, ImageBase64
+from validation_submission.processing import process_circumstance, process_behaviors, process_physical, process_followup
+
+def get_fields(data_dict, keyword):
+ extract = {}
+ for key, val in data_dict.items():
+ if keyword in key:
+ extract[key] = val
+ return extract
+
+def validate_individual(error_box):
+ error_box = reset_error_box(error_box)
+ data = get_json_one_individual()
+ data["identifier"] = str(uuid.uuid4())
+ if "image" in data.keys():
+ img = ImageBase64.to_base64(data["image"])
+ else:
+ img = None
+ if "geolocalisation" in data.keys():
+ geolocalisation = data["geolocalisation"]
+ else:
+ geolocalisation = None
+
+ error_behavior = None
+ error_circumstance = None
+ error_followup = None
+ error_physical = None
+ error_individual = None
+ if "wounded_state" not in data or "dead_state" not in data:
+ data["wounded_state"] = "No"
+ data["dead_state"] = "No"
+ if (data["wounded_state"] == "Yes") or (data["dead_state"] == "Yes"):
+ data_wounded_dead = get_json_tmp("wounded_dead")
+ circumstance, error_circumstance = validate_circumstance(data_wounded_dead)
+ physical, error_physical = validate_physical(data_wounded_dead)
+ followup, error_followup = validate_follow_up(data_wounded_dead)
+
+ if data["wounded_state"]=="Yes":
+ print(physical)
+ behavior, error_behavior = validate_behavior(data_wounded_dead)
+ try :
+ individual = Report(identifier = data["identifier"],
+ image = img,
+ geolocalisation = geolocalisation,
+ wounded_state = data["wounded_state"],
+ wounded = Wounded(circumstances = circumstance,
+ behaviors = behavior,
+ physical_anomalies = physical,
+ follow_up_events = followup),
+ dead_state = data["dead_state"])
+ except ValidationError as e:
+ print(e)
+ error_individual = e
+
+ elif data["dead_state"]=="Yes":
+ try:
+ individual = Report(identifier = data["identifier"],
+ image = img,
+ geolocalisation = geolocalisation,
+ wounded_state = data["wounded_state"],
+ dead_state = data["dead_state"],
+ dead = Dead(circumstances = circumstance,
+ physical_anomalies = physical,
+ follow_up_events = followup)
+ )
+ except ValidationError as e:
+ print(e)
+ error_individual = e
+ else:
+ try:
+ individual = Report(identifier = data["identifier"],
+ image = img,
+ geolocalisation = geolocalisation,
+ wounded_state = data["wounded_state"],
+ dead_state = data["dead_state"])
+ except ValidationError as e:
+ print(e)
+ error_individual = e
+ if error_behavior or error_circumstance or error_followup or error_physical or error_individual:
+ error_box = show_error(error_box, error_behavior, error_circumstance, error_followup, error_physical, error_individual)
+ individual = None
+ else:
+ error_box= gr.Text(label="ALL VALID.", value="Record Registered. You can return to the Display.", visible=True, elem_id="valid")
+ return individual, error_box
+
+def show_error(error_box, error_behavior, error_circumstance, error_followup, error_physical, error_individual):
+ error_text = ""
+ if error_circumstance:
+ error_text += f"Error in circumstance: {error_circumstance}\n"
+ if error_behavior:
+ error_text += f"Error in behavior: {error_behavior}\n"
+ if error_physical:
+ error_text += f"Error in physical: {error_physical}\n"
+ if error_followup:
+ error_text += f"Error in follow-up: {error_followup}\n"
+ if error_individual:
+ error_text += f"Error in individual: {error_individual}\n"
+ error_text += "PLEASE CORRECT THESE ERRORS BEFORE SUBMITTING."
+ error_box= gr.Text(label="ERROR DETECTED !", value=error_text, visible=True, elem_id="error")
+ return error_box
+
+def reset_error_box(error_box):
+ error_box = gr.Text(value=None, visible=False)
+ return error_box
+
+#### VALIDATION FUNCTIONS
+def validate_circumstance(data):
+ circumstance_raw = get_fields(data, "circumstance")
+ circumstance_formatted = process_circumstance(circumstance_raw)
+ try:
+ Circumstances.model_validate(circumstance_formatted)
+ circumstances = Circumstances(**circumstance_formatted)
+ error = None
+ except ValidationError as e:
+ error = e
+ print(e)
+ circumstances = None
+ return circumstances, error
+
+
+def validate_behavior(data):
+ behaviors_raw = get_fields(data, "behaviors")
+ behaviors_formatted = process_behaviors(behaviors_raw)
+ try:
+ Behaviors.model_validate(behaviors_formatted)
+ behavior = Behaviors(**behaviors_formatted)
+ error = None
+ except ValidationError as e:
+ print(e)
+ print("Validation failed for the behaviors.")
+ behavior = None
+ error = e
+ return behavior, error
+
+
+def validate_physical(data):
+ physical_raw = get_fields(data, "physical")
+ physical_formatted = process_physical(physical_raw)
+ try:
+ PhysicalAnomalies.model_validate(physical_formatted)
+ physical = PhysicalAnomalies(**physical_formatted)
+ error = None
+ except ValidationError as e:
+ print(e)
+ print("Validation failed for the physical anomalies.")
+ physical = None
+ error = e
+ return physical, error
+
+def validate_follow_up(data):
+ followup_raw = get_fields(data, "followup")
+ followup_formatted = process_followup(followup_raw)
+ try:
+ FollowUpEvents.model_validate(followup_formatted)
+ followup = FollowUpEvents(**followup_formatted)
+ error = None
+ except ValidationError as e:
+ print(e)
+ print("Validation failed for the follow-up events.")
+ followup = None
+ return followup, error
+
+
+
diff --git a/app/wounded.py b/app/wounded.py
new file mode 100644
index 0000000000000000000000000000000000000000..30340ca8601363e12bcfe52c4125fcfabeb2a441
--- /dev/null
+++ b/app/wounded.py
@@ -0,0 +1,49 @@
+import gradio as gr
+from circumstances.circumstances import create_circumstances
+from physical.physical_select_animal import create_bird_anatomy
+from physical.physical_checkbox import process_body_parts
+from behavior.behavior_checkbox import create_behavior_checkbox
+from follow_up.followup_events import create_followup_dropdowns, create_followup_open
+from validation_submission.add_json import add_data_to_individual
+
+def show_section_wounded(visible):
+ if visible==True:
+ add_data_to_individual("wounded_state", "Yes")
+ add_data_to_individual("dead_state", "No")
+
+ with gr.Column(visible=visible, elem_id="wounded") as wounded_section:
+ gr.Markdown("# Wounded / Sick Animal")
+
+ gr.Markdown("## Do you know what conditions caused this?", label="description")
+ radio_cause = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2 = create_circumstances(visible=False)
+
+ gr.Markdown("## Is the bird displaying behavioural changes?" , label="description")
+ radio_behaviour = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+ with gr.Row():
+ behavior_checkbox, behavior_text = create_behavior_checkbox("wounded", False)
+
+ gr.Markdown("## Are there physical changes on the bird?" , label="description")
+ radio_physical = gr.Radio(["Yes", "No"], value=None, show_label=False, interactive=True)
+ with gr.Row():
+ physical_boxes = create_bird_anatomy(False, "wounded")
+ with gr.Column():
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs = process_body_parts("wounded", "None")
+
+
+ gr.Markdown("## Follow-Up Events", label="Title")
+ gr.Markdown("Please tell us what you did with the animal.", label="description")
+ with gr.Row():
+ fe_collection_dropdown, fe_recepient_dropdown, fe_radio_dropdown, fe_answer_dropdown = create_followup_dropdowns(visible, "wounded")
+ with gr.Row():
+ fe_name_recipient, fe_collection_ref = create_followup_open(visible, "wounded")
+
+
+ # Change variables and names
+ return wounded_section, radio_cause, radio_behaviour, radio_physical, \
+ button_collision, button_deliberate_destruction, button_indirect_destruction, button_natural_cause, \
+ dropdown, dropdown_level2, openfield_level2, dropdown_extra_level2, \
+ behavior_checkbox, behavior_text, \
+ physical_boxes, \
+ checkbox_beak, text_beak, checkbox_body, text_body, checkbox_feathers, text_feathers, checkbox_head, text_head, checkbox_legs, text_legs, \
+ fe_collection_dropdown, fe_recepient_dropdown, fe_radio_dropdown, fe_answer_dropdown, fe_name_recipient, fe_collection_ref
diff --git a/data/.gitkeep b/data/.gitkeep
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/data/all_individuals.json b/data/all_individuals.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e26dfeeb6e641a33dae4961196235bdb965b21b
--- /dev/null
+++ b/data/all_individuals.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/data/one_individual.json b/data/one_individual.json
new file mode 100644
index 0000000000000000000000000000000000000000..9e26dfeeb6e641a33dae4961196235bdb965b21b
--- /dev/null
+++ b/data/one_individual.json
@@ -0,0 +1 @@
+{}
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000000000000000000000000000000000000..65e2914555f44c0328949b4b2bf626f23833737c
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,6 @@
+gradio
+gradio_modal
+geopy
+geopandas
+pillow
+python-dotenv
\ No newline at end of file
diff --git a/test.py b/test.py
new file mode 100644
index 0000000000000000000000000000000000000000..17728a5c334fc0d45d90b4d2683d3a915a14ad1d
--- /dev/null
+++ b/test.py
@@ -0,0 +1,10 @@
+# app.py
+import gradio as gr
+
+def greet(name):
+ return f"Hello, {name}!"
+
+demo = gr.Interface(fn=greet, inputs="text", outputs="text")
+
+if __name__ == "__main__":
+ demo.launch()
\ No newline at end of file