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from mammal_demo.demo_framework import ( | |
ModelRegistry, | |
TaskRegistry, | |
) | |
from mammal_demo.dti_task import DtiTask | |
from mammal_demo.ppi_task import PpiTask | |
from mammal_demo.ps_task import PsTask | |
from mammal_demo.tcr_task import TcrTask | |
def tasks_and_models(): | |
all_tasks = TaskRegistry() | |
all_models = ModelRegistry() | |
# first create the required tasks | |
# Note that the tasks need access to the models, as the model to use depends on the state of the widget | |
# we pass the all_models dict and update it when we actualy have the models. | |
ppi_task = all_tasks.register_task(PpiTask(model_dict=all_models)) | |
tdi_task = all_tasks.register_task(DtiTask(model_dict=all_models)) | |
ps_task = all_tasks.register_task(PsTask(model_dict=all_models)) | |
tcr_task = all_tasks.register_task(TcrTask(model_dict=all_models)) | |
# create the model holders. hold the model and the tokenizer, lazy download | |
# note that the list of relevent tasks needs to be stated. | |
all_models.register_model( | |
model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd", | |
task_list=[tdi_task], | |
) | |
all_models.register_model( | |
model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd_peer", | |
task_list=[tdi_task], | |
) | |
all_models.register_model( | |
model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind", | |
task_list=[tcr_task], | |
) | |
all_models.register_model( | |
model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.protein_solubility", | |
task_list=[ps_task], | |
) | |
all_models.register_model( | |
model_path="ibm/biomed.omics.bl.sm.ma-ted-458m", | |
task_list=[ppi_task], | |
) | |
all_models.register_model( | |
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_tox" | |
) | |
all_models.register_model( | |
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_fda" | |
) | |
all_models.register_model( | |
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_bbbp" | |
) | |
return all_tasks,all_models | |