Update

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v5.0.0
     hooks:
       - id: check-executables-have-shebangs
       - id: check-json
@@ -13,48 +13,21 @@ repos:
         args: ["--fix=lf"]
       - id: requirements-txt-fixer
       - id: trailing-whitespace
-  - repo: https://github.com/myint/docformatter
-    rev: v1.7.5
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.9.9
     hooks:
-      - id: docformatter
-        args: ["--in-place"]
-  - repo: https://github.com/pycqa/isort
-    rev: 5.13.2
-    hooks:
-      - id: isort
-        args: ["--profile", "black"]
+      - id: ruff
+        args: ["--fix"]
+      - id: ruff-format
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.8.0
+    rev: v1.15.0
     hooks:
       - id: mypy
         args: ["--ignore-missing-imports"]
         additional_dependencies:
           [
             "types-python-slugify",
-            "types-requests",
-            "types-PyYAML",
             "types-pytz",
+            "types-PyYAML",
+            "types-requests",
           ]
-  - repo: https://github.com/psf/black
-    rev: 24.2.0
-    hooks:
-      - id: black
-        language_version: python3.10
-        args: ["--line-length", "119"]
-  - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
-    hooks:
-      - id: nbstripout
-        args:
-          [
-            "--extra-keys",
-            "metadata.interpreter metadata.kernelspec cell.metadata.pycharm",
-          ]
-  - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
-    hooks:
-      - id: nbqa-black
-      - id: nbqa-pyupgrade
-        args: ["--py37-plus"]
-      - id: nbqa-isort
-        args: ["--float-to-top"]

.python-version

@@ -0,0 +1 @@
+3.10

.vscode/extensions.json

@@ -0,0 +1,8 @@
+{
+    "recommendations": [
+        "ms-python.python",
+        "charliermarsh.ruff",
+        "streetsidesoftware.code-spell-checker",
+        "tamasfe.even-better-toml"
+    ]
+}

.vscode/settings.json

@@ -2,29 +2,16 @@
     "editor.formatOnSave": true,
     "files.insertFinalNewline": false,
     "[python]": {
-        "editor.defaultFormatter": "ms-python.black-formatter",
+        "editor.defaultFormatter": "charliermarsh.ruff",
         "editor.formatOnType": true,
         "editor.codeActionsOnSave": {
+            "source.fixAll.ruff": "explicit",
             "source.organizeImports": "explicit"
         }
     },
     "[jupyter]": {
         "files.insertFinalNewline": false
     },
-    "black-formatter.args": [
-        "--line-length=119"
-    ],
-    "isort.args": ["--profile", "black"],
-    "flake8.args": [
-        "--max-line-length=119"
-    ],
-    "ruff.lint.args": [
-        "--line-length=119"
-    ],
     "notebook.output.scrolling": true,
-    "notebook.formatOnCellExecution": true,
-    "notebook.formatOnSave.enabled": true,
-        "notebook.codeActionsOnSave": {
-            "source.organizeImports": "explicit"
-        }
+    "notebook.formatOnSave.enabled": true
 }

README.md

@@ -4,7 +4,7 @@ emoji: 🐢
 colorFrom: blue
 colorTo: indigo
 sdk: gradio
-sdk_version: 4.36.1
+sdk_version: 5.20.0
 app_file: app.py
 pinned: false
 ---

app.py

@@ -1,22 +1,20 @@
 #!/usr/bin/env python
 
-from __future__ import annotations
-
 import functools
 import os
 import pathlib
 import sys
 import tarfile
-from typing import Callable
+from collections.abc import Callable
 
 import gradio as gr
 import huggingface_hub
 import numpy as np
 import PIL.Image
 import torch
-import torch.nn as nn
 import torchvision
-import torchvision.transforms as T
+import torchvision.transforms as T  # noqa: N812
+from torch import nn
 
 sys.path.insert(0, "bizarre-pose-estimator")
 
@@ -33,7 +31,7 @@ def load_sample_image_paths() -> list[pathlib.Path]:
         dataset_repo = "hysts/sample-images-TADNE"
         path = huggingface_hub.hf_hub_download(dataset_repo, "images.tar.gz", repo_type="dataset")
         with tarfile.open(path) as f:
-            f.extractall()
+            f.extractall()  # noqa: S202
     return sorted(image_dir.glob("*"))
 
 
@@ -116,7 +114,7 @@ transform = T.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])
 
 fn = functools.partial(predict, transform=transform, device=device, model=model, final_head=final_head)
 
-with gr.Blocks(css="style.css") as demo:
+with gr.Blocks(css_paths="style.css") as demo:
     gr.Markdown(DESCRIPTION)
     with gr.Row():
         with gr.Column():

pyproject.toml

@@ -0,0 +1,55 @@
+[project]
+name = "bizarre-pose-estimator-segmenter"
+version = "0.1.0"
+description = ""
+readme = "README.md"
+requires-python = ">=3.10"
+dependencies = [
+    "gradio>=5.20.0",
+    "hf-transfer>=0.1.9",
+    "numpy==1.23.5",
+    "torch==1.13.1",
+    "torchvision>=0.14.1",
+]
+
+[tool.ruff]
+line-length = 119
+
+[tool.ruff.lint]
+select = ["ALL"]
+ignore = [
+    "COM812", # missing-trailing-comma
+    "D203",   # one-blank-line-before-class
+    "D213",   # multi-line-summary-second-line
+    "E501",   # line-too-long
+    "SIM117", # multiple-with-statements
+]
+extend-ignore = [
+    "D100",    # undocumented-public-module
+    "D101",    # undocumented-public-class
+    "D102",    # undocumented-public-method
+    "D103",    # undocumented-public-function
+    "D104",    # undocumented-public-package
+    "D105",    # undocumented-magic-method
+    "D107",    # undocumented-public-init
+    "EM101",   # raw-string-in-exception
+    "FBT001",  # boolean-type-hint-positional-argument
+    "FBT002",  # boolean-default-value-positional-argument
+    "PD901",   # pandas-df-variable-name
+    "PGH003",  # blanket-type-ignore
+    "PLR0913", # too-many-arguments
+    "PLR0915", # too-many-statements
+    "TRY003",  # raise-vanilla-args
+]
+unfixable = [
+    "F401", # unused-import
+]
+
+[tool.ruff.lint.pydocstyle]
+convention = "google"
+
+[tool.ruff.lint.per-file-ignores]
+"*.ipynb" = ["T201", "T203"]
+
+[tool.ruff.format]
+docstring-code-format = true

requirements.txt

@@ -1,4 +1,185 @@
-gradio==4.36.1
+# This file was autogenerated by uv via the following command:
+#    uv pip compile pyproject.toml -o requirements.txt
+aiofiles==23.2.1
+    # via gradio
+annotated-types==0.7.0
+    # via pydantic
+anyio==4.8.0
+    # via
+    #   gradio
+    #   httpx
+    #   starlette
+certifi==2025.1.31
+    # via
+    #   httpcore
+    #   httpx
+    #   requests
+charset-normalizer==3.4.1
+    # via requests
+click==8.1.8
+    # via
+    #   typer
+    #   uvicorn
+exceptiongroup==1.2.2
+    # via anyio
+fastapi==0.115.11
+    # via gradio
+ffmpy==0.5.0
+    # via gradio
+filelock==3.17.0
+    # via huggingface-hub
+fsspec==2025.2.0
+    # via
+    #   gradio-client
+    #   huggingface-hub
+gradio==5.20.0
+    # via bizarre-pose-estimator-segmenter (pyproject.toml)
+gradio-client==1.7.2
+    # via gradio
+groovy==0.1.2
+    # via gradio
+h11==0.14.0
+    # via
+    #   httpcore
+    #   uvicorn
+hf-transfer==0.1.9
+    # via bizarre-pose-estimator-segmenter (pyproject.toml)
+httpcore==1.0.7
+    # via httpx
+httpx==0.28.1
+    # via
+    #   gradio
+    #   gradio-client
+    #   safehttpx
+huggingface-hub==0.29.2
+    # via
+    #   gradio
+    #   gradio-client
+idna==3.10
+    # via
+    #   anyio
+    #   httpx
+    #   requests
+jinja2==3.1.6
+    # via gradio
+markdown-it-py==3.0.0
+    # via rich
+markupsafe==2.1.5
+    # via
+    #   gradio
+    #   jinja2
+mdurl==0.1.2
+    # via markdown-it-py
 numpy==1.23.5
+    # via
+    #   bizarre-pose-estimator-segmenter (pyproject.toml)
+    #   gradio
+    #   pandas
+    #   torchvision
+nvidia-cublas-cu11==11.10.3.66
+    # via
+    #   nvidia-cudnn-cu11
+    #   torch
+nvidia-cuda-nvrtc-cu11==11.7.99
+    # via torch
+nvidia-cuda-runtime-cu11==11.7.99
+    # via torch
+nvidia-cudnn-cu11==8.5.0.96
+    # via torch
+orjson==3.10.15
+    # via gradio
+packaging==24.2
+    # via
+    #   gradio
+    #   gradio-client
+    #   huggingface-hub
+pandas==2.2.3
+    # via gradio
+pillow==11.1.0
+    # via
+    #   gradio
+    #   torchvision
+pydantic==2.10.6
+    # via
+    #   fastapi
+    #   gradio
+pydantic-core==2.27.2
+    # via pydantic
+pydub==0.25.1
+    # via gradio
+pygments==2.19.1
+    # via rich
+python-dateutil==2.9.0.post0
+    # via pandas
+python-multipart==0.0.20
+    # via gradio
+pytz==2025.1
+    # via pandas
+pyyaml==6.0.2
+    # via
+    #   gradio
+    #   huggingface-hub
+requests==2.32.3
+    # via
+    #   huggingface-hub
+    #   torchvision
+rich==13.9.4
+    # via typer
+ruff==0.9.9
+    # via gradio
+safehttpx==0.1.6
+    # via gradio
+semantic-version==2.10.0
+    # via gradio
+setuptools==75.8.2
+    # via
+    #   nvidia-cublas-cu11
+    #   nvidia-cuda-runtime-cu11
+shellingham==1.5.4
+    # via typer
+six==1.17.0
+    # via python-dateutil
+sniffio==1.3.1
+    # via anyio
+starlette==0.46.0
+    # via
+    #   fastapi
+    #   gradio
+tomlkit==0.13.2
+    # via gradio
 torch==1.13.1
+    # via
+    #   bizarre-pose-estimator-segmenter (pyproject.toml)
+    #   torchvision
 torchvision==0.14.1
+    # via bizarre-pose-estimator-segmenter (pyproject.toml)
+tqdm==4.67.1
+    # via huggingface-hub
+typer==0.15.2
+    # via gradio
+typing-extensions==4.12.2
+    # via
+    #   anyio
+    #   fastapi
+    #   gradio
+    #   gradio-client
+    #   huggingface-hub
+    #   pydantic
+    #   pydantic-core
+    #   rich
+    #   torch
+    #   torchvision
+    #   typer
+    #   uvicorn
+tzdata==2025.1
+    # via pandas
+urllib3==2.3.0
+    # via requests
+uvicorn==0.34.0
+    # via gradio
+websockets==15.0.1
+    # via gradio-client
+wheel==0.45.1
+    # via
+    #   nvidia-cublas-cu11
+    #   nvidia-cuda-runtime-cu11