| # cython: embedsignature=True | |
| # cython: profile=True | |
| # adds doc-strings for sphinx | |
| import tempfile | |
| import os | |
| import sys | |
| import types | |
| import itertools | |
| import struct | |
| import ctypes | |
| import collections | |
| import re | |
| import platform | |
| import warnings | |
| from cpython cimport PyErr_SetString, \ | |
| PyBytes_Check, \ | |
| PyUnicode_Check, \ | |
| PyBytes_FromStringAndSize | |
| from pysam.libcalignmentfile cimport AlignmentFile, AlignedSegment | |
| cdef class Samfile(AlignmentFile): | |
| '''Deprecated alternative for :class:`~pysam.AlignmentFile` | |
| Added for backwards compatibility with pysam <= 0.8.0 | |
| ''' | |
| pass | |
| cdef class AlignedRead(AlignedSegment): | |
| '''Deprecated alternative for :class:`~pysam.AlignedSegment` | |
| Added for backwards compatibility with pysam <= 0.8.0 | |
| ''' | |
| pass | |
| __all__ = ['Samfile', 'AlignedRead'] | |