| /* bam.h -- miscellaneous BAM functions. | |
| Copyright (C) 2008-2014, 2019 Genome Research Ltd. | |
| Author: Heng Li <[email protected]> | |
| Permission is hereby granted, free of charge, to any person obtaining a copy | |
| of this software and associated documentation files (the "Software"), to deal | |
| in the Software without restriction, including without limitation the rights | |
| to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| copies of the Software, and to permit persons to whom the Software is | |
| furnished to do so, subject to the following conditions: | |
| The above copyright notice and this permission notice shall be included in | |
| all copies or substantial portions of the Software. | |
| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | |
| IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | |
| FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL | |
| THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | |
| LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING | |
| FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER | |
| DEALINGS IN THE SOFTWARE. */ | |
| int bam_remove_B(bam1_t *b); | |
| const char *bam_get_library(sam_hdr_t *header, const bam1_t *b); | |
| hts_pos_t unclipped_start(bam1_t *b); | |
| hts_pos_t unclipped_other_start(hts_pos_t op, char *cigar); | |
| hts_pos_t unclipped_end(bam1_t *b); | |
| hts_pos_t unclipped_other_end(int64_t op, char *cigar); | |