File size: 32,430 Bytes
fe41391 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 |
"""
A directive for including a Matplotlib plot in a Sphinx document
================================================================
This is a Sphinx extension providing a reStructuredText directive
``.. plot::`` for including a plot in a Sphinx document.
In HTML output, ``.. plot::`` will include a .png file with a link
to a high-res .png and .pdf. In LaTeX output, it will include a .pdf.
The plot content may be defined in one of three ways:
1. **A path to a source file** as the argument to the directive::
.. plot:: path/to/plot.py
When a path to a source file is given, the content of the
directive may optionally contain a caption for the plot::
.. plot:: path/to/plot.py
The plot caption.
Additionally, one may specify the name of a function to call (with
no arguments) immediately after importing the module::
.. plot:: path/to/plot.py plot_function1
2. Included as **inline content** to the directive::
.. plot::
import matplotlib.pyplot as plt
plt.plot([1, 2, 3], [4, 5, 6])
plt.title("A plotting exammple")
3. Using **doctest** syntax::
.. plot::
A plotting example:
>>> import matplotlib.pyplot as plt
>>> plt.plot([1, 2, 3], [4, 5, 6])
Options
-------
The ``.. plot::`` directive supports the following options:
``:format:`` : {'python', 'doctest'}
The format of the input. If unset, the format is auto-detected.
``:include-source:`` : bool
Whether to display the source code. The default can be changed using
the ``plot_include_source`` variable in :file:`conf.py` (which itself
defaults to False).
``:show-source-link:`` : bool
Whether to show a link to the source in HTML. The default can be
changed using the ``plot_html_show_source_link`` variable in
:file:`conf.py` (which itself defaults to True).
``:context:`` : bool or str
If provided, the code will be run in the context of all previous plot
directives for which the ``:context:`` option was specified. This only
applies to inline code plot directives, not those run from files. If
the ``:context: reset`` option is specified, the context is reset
for this and future plots, and previous figures are closed prior to
running the code. ``:context: close-figs`` keeps the context but closes
previous figures before running the code.
``:nofigs:`` : bool
If specified, the code block will be run, but no figures will be
inserted. This is usually useful with the ``:context:`` option.
``:caption:`` : str
If specified, the option's argument will be used as a caption for the
figure. This overwrites the caption given in the content, when the plot
is generated from a file.
Additionally, this directive supports all the options of the `image directive
<https://docutils.sourceforge.io/docs/ref/rst/directives.html#image>`_,
except for ``:target:`` (since plot will add its own target). These include
``:alt:``, ``:height:``, ``:width:``, ``:scale:``, ``:align:`` and ``:class:``.
Configuration options
---------------------
The plot directive has the following configuration options:
plot_include_source
Default value for the include-source option (default: False).
plot_html_show_source_link
Whether to show a link to the source in HTML (default: True).
plot_pre_code
Code that should be executed before each plot. If None (the default),
it will default to a string containing::
import numpy as np
from matplotlib import pyplot as plt
plot_basedir
Base directory, to which ``plot::`` file names are relative to.
If None or empty (the default), file names are relative to the
directory where the file containing the directive is.
plot_formats
File formats to generate (default: ['png', 'hires.png', 'pdf']).
List of tuples or strings::
[(suffix, dpi), suffix, ...]
that determine the file format and the DPI. For entries whose
DPI was omitted, sensible defaults are chosen. When passing from
the command line through sphinx_build the list should be passed as
suffix:dpi,suffix:dpi, ...
plot_html_show_formats
Whether to show links to the files in HTML (default: True).
plot_rcparams
A dictionary containing any non-standard rcParams that should
be applied before each plot (default: {}).
plot_apply_rcparams
By default, rcParams are applied when ``:context:`` option is not used
in a plot directive. If set, this configuration option overrides this
behavior and applies rcParams before each plot.
plot_working_directory
By default, the working directory will be changed to the directory of
the example, so the code can get at its data files, if any. Also its
path will be added to `sys.path` so it can import any helper modules
sitting beside it. This configuration option can be used to specify
a central directory (also added to `sys.path`) where data files and
helper modules for all code are located.
plot_template
Provide a customized template for preparing restructured text.
plot_srcset
Allow the srcset image option for responsive image resolutions. List of
strings with the multiplicative factors followed by an "x".
e.g. ["2.0x", "1.5x"]. "2.0x" will create a png with the default "png"
resolution from plot_formats, multiplied by 2. If plot_srcset is
specified, the plot directive uses the
:doc:`/api/sphinxext_figmpl_directive_api` (instead of the usual figure
directive) in the intermediary rst file that is generated.
The plot_srcset option is incompatible with *singlehtml* builds, and an
error will be raised.
Notes on how it works
---------------------
The plot directive runs the code it is given, either in the source file or the
code under the directive. The figure created (if any) is saved in the sphinx
build directory under a subdirectory named ``plot_directive``. It then creates
an intermediate rst file that calls a ``.. figure:`` directive (or
``.. figmpl::`` directive if ``plot_srcset`` is being used) and has links to
the ``*.png`` files in the ``plot_directive`` directory. These translations can
be customized by changing the *plot_template*. See the source of
:doc:`/api/sphinxext_plot_directive_api` for the templates defined in *TEMPLATE*
and *TEMPLATE_SRCSET*.
"""
import contextlib
import doctest
from io import StringIO
import itertools
import os
from os.path import relpath
from pathlib import Path
import re
import shutil
import sys
import textwrap
import traceback
from docutils.parsers.rst import directives, Directive
from docutils.parsers.rst.directives.images import Image
import jinja2 # Sphinx dependency.
from sphinx.errors import ExtensionError
import matplotlib
from matplotlib.backend_bases import FigureManagerBase
import matplotlib.pyplot as plt
from matplotlib import _pylab_helpers, cbook
matplotlib.use("agg")
__version__ = 2
# -----------------------------------------------------------------------------
# Registration hook
# -----------------------------------------------------------------------------
def _option_boolean(arg):
if not arg or not arg.strip():
# no argument given, assume used as a flag
return True
elif arg.strip().lower() in ('no', '0', 'false'):
return False
elif arg.strip().lower() in ('yes', '1', 'true'):
return True
else:
raise ValueError(f'{arg!r} unknown boolean')
def _option_context(arg):
if arg in [None, 'reset', 'close-figs']:
return arg
raise ValueError("Argument should be None or 'reset' or 'close-figs'")
def _option_format(arg):
return directives.choice(arg, ('python', 'doctest'))
def mark_plot_labels(app, document):
"""
To make plots referenceable, we need to move the reference from the
"htmlonly" (or "latexonly") node to the actual figure node itself.
"""
for name, explicit in document.nametypes.items():
if not explicit:
continue
labelid = document.nameids[name]
if labelid is None:
continue
node = document.ids[labelid]
if node.tagname in ('html_only', 'latex_only'):
for n in node:
if n.tagname == 'figure':
sectname = name
for c in n:
if c.tagname == 'caption':
sectname = c.astext()
break
node['ids'].remove(labelid)
node['names'].remove(name)
n['ids'].append(labelid)
n['names'].append(name)
document.settings.env.labels[name] = \
document.settings.env.docname, labelid, sectname
break
class PlotDirective(Directive):
"""The ``.. plot::`` directive, as documented in the module's docstring."""
has_content = True
required_arguments = 0
optional_arguments = 2
final_argument_whitespace = False
option_spec = {
'alt': directives.unchanged,
'height': directives.length_or_unitless,
'width': directives.length_or_percentage_or_unitless,
'scale': directives.nonnegative_int,
'align': Image.align,
'class': directives.class_option,
'include-source': _option_boolean,
'show-source-link': _option_boolean,
'format': _option_format,
'context': _option_context,
'nofigs': directives.flag,
'caption': directives.unchanged,
}
def run(self):
"""Run the plot directive."""
try:
return run(self.arguments, self.content, self.options,
self.state_machine, self.state, self.lineno)
except Exception as e:
raise self.error(str(e))
def _copy_css_file(app, exc):
if exc is None and app.builder.format == 'html':
src = cbook._get_data_path('plot_directive/plot_directive.css')
dst = app.outdir / Path('_static')
dst.mkdir(exist_ok=True)
# Use copyfile because we do not want to copy src's permissions.
shutil.copyfile(src, dst / Path('plot_directive.css'))
def setup(app):
setup.app = app
setup.config = app.config
setup.confdir = app.confdir
app.add_directive('plot', PlotDirective)
app.add_config_value('plot_pre_code', None, True)
app.add_config_value('plot_include_source', False, True)
app.add_config_value('plot_html_show_source_link', True, True)
app.add_config_value('plot_formats', ['png', 'hires.png', 'pdf'], True)
app.add_config_value('plot_basedir', None, True)
app.add_config_value('plot_html_show_formats', True, True)
app.add_config_value('plot_rcparams', {}, True)
app.add_config_value('plot_apply_rcparams', False, True)
app.add_config_value('plot_working_directory', None, True)
app.add_config_value('plot_template', None, True)
app.add_config_value('plot_srcset', [], True)
app.connect('doctree-read', mark_plot_labels)
app.add_css_file('plot_directive.css')
app.connect('build-finished', _copy_css_file)
metadata = {'parallel_read_safe': True, 'parallel_write_safe': True,
'version': matplotlib.__version__}
return metadata
# -----------------------------------------------------------------------------
# Doctest handling
# -----------------------------------------------------------------------------
def contains_doctest(text):
try:
# check if it's valid Python as-is
compile(text, '<string>', 'exec')
return False
except SyntaxError:
pass
r = re.compile(r'^\s*>>>', re.M)
m = r.search(text)
return bool(m)
def _split_code_at_show(text, function_name):
"""Split code at plt.show()."""
is_doctest = contains_doctest(text)
if function_name is None:
parts = []
part = []
for line in text.split("\n"):
if ((not is_doctest and line.startswith('plt.show(')) or
(is_doctest and line.strip() == '>>> plt.show()')):
part.append(line)
parts.append("\n".join(part))
part = []
else:
part.append(line)
if "\n".join(part).strip():
parts.append("\n".join(part))
else:
parts = [text]
return is_doctest, parts
# -----------------------------------------------------------------------------
# Template
# -----------------------------------------------------------------------------
_SOURCECODE = """
{{ source_code }}
.. only:: html
{% if src_name or (html_show_formats and not multi_image) %}
(
{%- if src_name -%}
:download:`Source code <{{ build_dir }}/{{ src_name }}>`
{%- endif -%}
{%- if html_show_formats and not multi_image -%}
{%- for img in images -%}
{%- for fmt in img.formats -%}
{%- if src_name or not loop.first -%}, {% endif -%}
:download:`{{ fmt }} <{{ build_dir }}/{{ img.basename }}.{{ fmt }}>`
{%- endfor -%}
{%- endfor -%}
{%- endif -%}
)
{% endif %}
"""
TEMPLATE_SRCSET = _SOURCECODE + """
{% for img in images %}
.. figure-mpl:: {{ build_dir }}/{{ img.basename }}.{{ default_fmt }}
{% for option in options -%}
{{ option }}
{% endfor %}
{%- if caption -%}
{{ caption }} {# appropriate leading whitespace added beforehand #}
{% endif -%}
{%- if srcset -%}
:srcset: {{ build_dir }}/{{ img.basename }}.{{ default_fmt }}
{%- for sr in srcset -%}
, {{ build_dir }}/{{ img.basename }}.{{ sr }}.{{ default_fmt }} {{sr}}
{%- endfor -%}
{% endif %}
{% if html_show_formats and multi_image %}
(
{%- for fmt in img.formats -%}
{%- if not loop.first -%}, {% endif -%}
:download:`{{ fmt }} <{{ build_dir }}/{{ img.basename }}.{{ fmt }}>`
{%- endfor -%}
)
{% endif %}
{% endfor %}
.. only:: not html
{% for img in images %}
.. figure-mpl:: {{ build_dir }}/{{ img.basename }}.*
{% for option in options -%}
{{ option }}
{% endfor -%}
{{ caption }} {# appropriate leading whitespace added beforehand #}
{% endfor %}
"""
TEMPLATE = _SOURCECODE + """
{% for img in images %}
.. figure:: {{ build_dir }}/{{ img.basename }}.{{ default_fmt }}
{% for option in options -%}
{{ option }}
{% endfor %}
{% if html_show_formats and multi_image -%}
(
{%- for fmt in img.formats -%}
{%- if not loop.first -%}, {% endif -%}
:download:`{{ fmt }} <{{ build_dir }}/{{ img.basename }}.{{ fmt }}>`
{%- endfor -%}
)
{%- endif -%}
{{ caption }} {# appropriate leading whitespace added beforehand #}
{% endfor %}
.. only:: not html
{% for img in images %}
.. figure:: {{ build_dir }}/{{ img.basename }}.*
{% for option in options -%}
{{ option }}
{% endfor -%}
{{ caption }} {# appropriate leading whitespace added beforehand #}
{% endfor %}
"""
exception_template = """
.. only:: html
[`source code <%(linkdir)s/%(basename)s.py>`__]
Exception occurred rendering plot.
"""
# the context of the plot for all directives specified with the
# :context: option
plot_context = dict()
class ImageFile:
def __init__(self, basename, dirname):
self.basename = basename
self.dirname = dirname
self.formats = []
def filename(self, format):
return os.path.join(self.dirname, f"{self.basename}.{format}")
def filenames(self):
return [self.filename(fmt) for fmt in self.formats]
def out_of_date(original, derived, includes=None):
"""
Return whether *derived* is out-of-date relative to *original* or any of
the RST files included in it using the RST include directive (*includes*).
*derived* and *original* are full paths, and *includes* is optionally a
list of full paths which may have been included in the *original*.
"""
if not os.path.exists(derived):
return True
if includes is None:
includes = []
files_to_check = [original, *includes]
def out_of_date_one(original, derived_mtime):
return (os.path.exists(original) and
derived_mtime < os.stat(original).st_mtime)
derived_mtime = os.stat(derived).st_mtime
return any(out_of_date_one(f, derived_mtime) for f in files_to_check)
class PlotError(RuntimeError):
pass
def _run_code(code, code_path, ns=None, function_name=None):
"""
Import a Python module from a path, and run the function given by
name, if function_name is not None.
"""
# Change the working directory to the directory of the example, so
# it can get at its data files, if any. Add its path to sys.path
# so it can import any helper modules sitting beside it.
pwd = os.getcwd()
if setup.config.plot_working_directory is not None:
try:
os.chdir(setup.config.plot_working_directory)
except OSError as err:
raise OSError(f'{err}\n`plot_working_directory` option in '
f'Sphinx configuration file must be a valid '
f'directory path') from err
except TypeError as err:
raise TypeError(f'{err}\n`plot_working_directory` option in '
f'Sphinx configuration file must be a string or '
f'None') from err
elif code_path is not None:
dirname = os.path.abspath(os.path.dirname(code_path))
os.chdir(dirname)
with cbook._setattr_cm(
sys, argv=[code_path], path=[os.getcwd(), *sys.path]), \
contextlib.redirect_stdout(StringIO()):
try:
if ns is None:
ns = {}
if not ns:
if setup.config.plot_pre_code is None:
exec('import numpy as np\n'
'from matplotlib import pyplot as plt\n', ns)
else:
exec(str(setup.config.plot_pre_code), ns)
if "__main__" in code:
ns['__name__'] = '__main__'
# Patch out non-interactive show() to avoid triggering a warning.
with cbook._setattr_cm(FigureManagerBase, show=lambda self: None):
exec(code, ns)
if function_name is not None:
exec(function_name + "()", ns)
except (Exception, SystemExit) as err:
raise PlotError(traceback.format_exc()) from err
finally:
os.chdir(pwd)
return ns
def clear_state(plot_rcparams, close=True):
if close:
plt.close('all')
matplotlib.rc_file_defaults()
matplotlib.rcParams.update(plot_rcparams)
def get_plot_formats(config):
default_dpi = {'png': 80, 'hires.png': 200, 'pdf': 200}
formats = []
plot_formats = config.plot_formats
for fmt in plot_formats:
if isinstance(fmt, str):
if ':' in fmt:
suffix, dpi = fmt.split(':')
formats.append((str(suffix), int(dpi)))
else:
formats.append((fmt, default_dpi.get(fmt, 80)))
elif isinstance(fmt, (tuple, list)) and len(fmt) == 2:
formats.append((str(fmt[0]), int(fmt[1])))
else:
raise PlotError('invalid image format "%r" in plot_formats' % fmt)
return formats
def _parse_srcset(entries):
"""
Parse srcset for multiples...
"""
srcset = {}
for entry in entries:
entry = entry.strip()
if len(entry) >= 2:
mult = entry[:-1]
srcset[float(mult)] = entry
else:
raise ExtensionError(f'srcset argument {entry!r} is invalid.')
return srcset
def render_figures(code, code_path, output_dir, output_base, context,
function_name, config, context_reset=False,
close_figs=False,
code_includes=None):
"""
Run a pyplot script and save the images in *output_dir*.
Save the images under *output_dir* with file names derived from
*output_base*
"""
if function_name is not None:
output_base = f'{output_base}_{function_name}'
formats = get_plot_formats(config)
# Try to determine if all images already exist
is_doctest, code_pieces = _split_code_at_show(code, function_name)
# Look for single-figure output files first
img = ImageFile(output_base, output_dir)
for format, dpi in formats:
if context or out_of_date(code_path, img.filename(format),
includes=code_includes):
all_exists = False
break
img.formats.append(format)
else:
all_exists = True
if all_exists:
return [(code, [img])]
# Then look for multi-figure output files
results = []
for i, code_piece in enumerate(code_pieces):
images = []
for j in itertools.count():
if len(code_pieces) > 1:
img = ImageFile('%s_%02d_%02d' % (output_base, i, j),
output_dir)
else:
img = ImageFile('%s_%02d' % (output_base, j), output_dir)
for fmt, dpi in formats:
if context or out_of_date(code_path, img.filename(fmt),
includes=code_includes):
all_exists = False
break
img.formats.append(fmt)
# assume that if we have one, we have them all
if not all_exists:
all_exists = (j > 0)
break
images.append(img)
if not all_exists:
break
results.append((code_piece, images))
else:
all_exists = True
if all_exists:
return results
# We didn't find the files, so build them
results = []
ns = plot_context if context else {}
if context_reset:
clear_state(config.plot_rcparams)
plot_context.clear()
close_figs = not context or close_figs
for i, code_piece in enumerate(code_pieces):
if not context or config.plot_apply_rcparams:
clear_state(config.plot_rcparams, close_figs)
elif close_figs:
plt.close('all')
_run_code(doctest.script_from_examples(code_piece) if is_doctest
else code_piece,
code_path, ns, function_name)
images = []
fig_managers = _pylab_helpers.Gcf.get_all_fig_managers()
for j, figman in enumerate(fig_managers):
if len(fig_managers) == 1 and len(code_pieces) == 1:
img = ImageFile(output_base, output_dir)
elif len(code_pieces) == 1:
img = ImageFile("%s_%02d" % (output_base, j), output_dir)
else:
img = ImageFile("%s_%02d_%02d" % (output_base, i, j),
output_dir)
images.append(img)
for fmt, dpi in formats:
try:
figman.canvas.figure.savefig(img.filename(fmt), dpi=dpi)
if fmt == formats[0][0] and config.plot_srcset:
# save a 2x, 3x etc version of the default...
srcset = _parse_srcset(config.plot_srcset)
for mult, suffix in srcset.items():
fm = f'{suffix}.{fmt}'
img.formats.append(fm)
figman.canvas.figure.savefig(img.filename(fm),
dpi=int(dpi * mult))
except Exception as err:
raise PlotError(traceback.format_exc()) from err
img.formats.append(fmt)
results.append((code_piece, images))
if not context or config.plot_apply_rcparams:
clear_state(config.plot_rcparams, close=not context)
return results
def run(arguments, content, options, state_machine, state, lineno):
document = state_machine.document
config = document.settings.env.config
nofigs = 'nofigs' in options
if config.plot_srcset and setup.app.builder.name == 'singlehtml':
raise ExtensionError(
'plot_srcset option not compatible with single HTML writer')
formats = get_plot_formats(config)
default_fmt = formats[0][0]
options.setdefault('include-source', config.plot_include_source)
options.setdefault('show-source-link', config.plot_html_show_source_link)
if 'class' in options:
# classes are parsed into a list of string, and output by simply
# printing the list, abusing the fact that RST guarantees to strip
# non-conforming characters
options['class'] = ['plot-directive'] + options['class']
else:
options.setdefault('class', ['plot-directive'])
keep_context = 'context' in options
context_opt = None if not keep_context else options['context']
rst_file = document.attributes['source']
rst_dir = os.path.dirname(rst_file)
if len(arguments):
if not config.plot_basedir:
source_file_name = os.path.join(setup.app.builder.srcdir,
directives.uri(arguments[0]))
else:
source_file_name = os.path.join(setup.confdir, config.plot_basedir,
directives.uri(arguments[0]))
# If there is content, it will be passed as a caption.
caption = '\n'.join(content)
# Enforce unambiguous use of captions.
if "caption" in options:
if caption:
raise ValueError(
'Caption specified in both content and options.'
' Please remove ambiguity.'
)
# Use caption option
caption = options["caption"]
# If the optional function name is provided, use it
if len(arguments) == 2:
function_name = arguments[1]
else:
function_name = None
code = Path(source_file_name).read_text(encoding='utf-8')
output_base = os.path.basename(source_file_name)
else:
source_file_name = rst_file
code = textwrap.dedent("\n".join(map(str, content)))
counter = document.attributes.get('_plot_counter', 0) + 1
document.attributes['_plot_counter'] = counter
base, ext = os.path.splitext(os.path.basename(source_file_name))
output_base = '%s-%d.py' % (base, counter)
function_name = None
caption = options.get('caption', '')
base, source_ext = os.path.splitext(output_base)
if source_ext in ('.py', '.rst', '.txt'):
output_base = base
else:
source_ext = ''
# ensure that LaTeX includegraphics doesn't choke in foo.bar.pdf filenames
output_base = output_base.replace('.', '-')
# is it in doctest format?
is_doctest = contains_doctest(code)
if 'format' in options:
if options['format'] == 'python':
is_doctest = False
else:
is_doctest = True
# determine output directory name fragment
source_rel_name = relpath(source_file_name, setup.confdir)
source_rel_dir = os.path.dirname(source_rel_name).lstrip(os.path.sep)
# build_dir: where to place output files (temporarily)
build_dir = os.path.join(os.path.dirname(setup.app.doctreedir),
'plot_directive',
source_rel_dir)
# get rid of .. in paths, also changes pathsep
# see note in Python docs for warning about symbolic links on Windows.
# need to compare source and dest paths at end
build_dir = os.path.normpath(build_dir)
os.makedirs(build_dir, exist_ok=True)
# how to link to files from the RST file
try:
build_dir_link = relpath(build_dir, rst_dir).replace(os.path.sep, '/')
except ValueError:
# on Windows, relpath raises ValueError when path and start are on
# different mounts/drives
build_dir_link = build_dir
# get list of included rst files so that the output is updated when any
# plots in the included files change. These attributes are modified by the
# include directive (see the docutils.parsers.rst.directives.misc module).
try:
source_file_includes = [os.path.join(os.getcwd(), t[0])
for t in state.document.include_log]
except AttributeError:
# the document.include_log attribute only exists in docutils >=0.17,
# before that we need to inspect the state machine
possible_sources = {os.path.join(setup.confdir, t[0])
for t in state_machine.input_lines.items}
source_file_includes = [f for f in possible_sources
if os.path.isfile(f)]
# remove the source file itself from the includes
try:
source_file_includes.remove(source_file_name)
except ValueError:
pass
# save script (if necessary)
if options['show-source-link']:
Path(build_dir, output_base + source_ext).write_text(
doctest.script_from_examples(code)
if source_file_name == rst_file and is_doctest
else code,
encoding='utf-8')
# make figures
try:
results = render_figures(code=code,
code_path=source_file_name,
output_dir=build_dir,
output_base=output_base,
context=keep_context,
function_name=function_name,
config=config,
context_reset=context_opt == 'reset',
close_figs=context_opt == 'close-figs',
code_includes=source_file_includes)
errors = []
except PlotError as err:
reporter = state.memo.reporter
sm = reporter.system_message(
2, "Exception occurred in plotting {}\n from {}:\n{}".format(
output_base, source_file_name, err),
line=lineno)
results = [(code, [])]
errors = [sm]
# Properly indent the caption
if caption and config.plot_srcset:
caption = f':caption: {caption}'
elif caption:
caption = '\n' + '\n'.join(' ' + line.strip()
for line in caption.split('\n'))
# generate output restructuredtext
total_lines = []
for j, (code_piece, images) in enumerate(results):
if options['include-source']:
if is_doctest:
lines = ['', *code_piece.splitlines()]
else:
lines = ['.. code-block:: python', '',
*textwrap.indent(code_piece, ' ').splitlines()]
source_code = "\n".join(lines)
else:
source_code = ""
if nofigs:
images = []
opts = [
f':{key}: {val}' for key, val in options.items()
if key in ('alt', 'height', 'width', 'scale', 'align', 'class')]
# Not-None src_name signals the need for a source download in the
# generated html
if j == 0 and options['show-source-link']:
src_name = output_base + source_ext
else:
src_name = None
if config.plot_srcset:
srcset = [*_parse_srcset(config.plot_srcset).values()]
template = TEMPLATE_SRCSET
else:
srcset = None
template = TEMPLATE
result = jinja2.Template(config.plot_template or template).render(
default_fmt=default_fmt,
build_dir=build_dir_link,
src_name=src_name,
multi_image=len(images) > 1,
options=opts,
srcset=srcset,
images=images,
source_code=source_code,
html_show_formats=config.plot_html_show_formats and len(images),
caption=caption)
total_lines.extend(result.split("\n"))
total_lines.extend("\n")
if total_lines:
state_machine.insert_input(total_lines, source=source_file_name)
return errors
|