Commit History

update hyperpcm overview figure
9de877c

emmas96 commited on

update interface to choose target in retrieval
94a9538

emmas96 commited on

update retrieval
3c1ebe4

emmas96 commited on

temporarily comment out fold dependencies
7c52b50

emmas96 commited on

update comments for planned future functionalities
63ce71b

emmas96 commited on

add torch
9cefb25

emmas96 commited on

attempt to fix missing dependencies for esm fold
0a80a05

emmas96 commited on

try esm fold
8d25d5d

emmas96 commited on

try protein sequence prediction directly with esm package
39315d2

emmas96 commited on

rename function to display protein
ce1a0a5

emmas96 commited on

predict protein sequence using esm from bio-embeddings
2f637fc

emmas96 commited on

upgrade sdk version
942d70b

emmas96 commited on

revert
7b1983b

emmas96 commited on

try fix in updated version
e1c67d1

emmas96 commited on

check basic dependency in new version
e869110

emmas96 commited on

temporarily disable display dti
f58b2a4

emmas96 commited on

add dummy retrieval page
9e6028d

emmas96 commited on

try to add esm
0c85072

emmas96 commited on

fix bug in bio_embedding usage
09b62c7

emmas96 commited on

add base bio_embeddings
cad2051

emmas96 commited on

try bio_embeddings with only allennlp for SeqVec
d140399

emmas96 commited on

revert to check seqvec from bio_embeddings allennlp only
ae5b369

emmas96 commited on

rdkit required for molecule visualization
1473877

emmas96 commited on

clean to check UniRep
0f9ba1c

emmas96 commited on

revert requirements
7f14736

emmas96 commited on

Update requirements.txt
868ed13

emmas96 commited on

downgrade scikit-learn to 0.21.3 for MolBERT requirement
0ce54f4

emmas96 commited on

add MolBERT
7d1a024

emmas96 commited on

redirect SeqVec
d847984

emmas96 commited on

attempt work around for SeqVec
ca0a8fe

emmas96 commited on

use precomputed embeddings
1107c98

emmas96 commited on

Update requirements.txt
e181d98

emmas96 commited on

Update README.md
052129b

emmas96 commited on

Update README.md
c8d0a85

emmas96 commited on

Update README.md
84c5ec4

emmas96 commited on

Update README.md
1670900

emmas96 commited on

Update requirements.txt
49fcf65

emmas96 commited on

change python version for CDDD requirement
e38d443

emmas96 commited on

change to internal default CDDD model
f398b03

emmas96 commited on

Delete src/encoders/cddd/tmp
c9956cd

emmas96 commited on

try to upload cddd default model
5661241

emmas96 commited on

create folder for cddd default model
7086819

emmas96 commited on

Update app.py
c442b67

emmas96 commited on

Update app.py
7e90759

emmas96 commited on

Update requirements.txt
e4784a6

emmas96 commited on

load molecule encoder checkpoints from HuggingFace model card
1a8ab89

emmas96 commited on

Update requirements.txt
c2ba285

emmas96 commited on

Update requirements.txt
fb85adb

emmas96 commited on

Update requirements.txt
e8dc2bd

emmas96 commited on

Update requirements.txt
82c0a87

emmas96 commited on