Commits · emmas96/hyper-dti

add warnings and progress bars

499faaf

emmas96 commited on May 24, 2023

repeat dummy smiles in retrieval

483853f

emmas96 commited on May 24, 2023

temporarily simplify protein encoding

2d2e3fe

emmas96 commited on May 24, 2023

bug in retrieval

51218b3

emmas96 commited on May 24, 2023

update illustrations of respective encoders

65c318c

emmas96 commited on May 24, 2023

update interface to choose target in retrieval

94a9538

emmas96 commited on May 24, 2023

update retrieval

3c1ebe4

emmas96 commited on May 24, 2023

update comments for planned future functionalities

63ce71b

emmas96 commited on May 24, 2023

try esm fold

8d25d5d

emmas96 commited on May 24, 2023

try protein sequence prediction directly with esm package

39315d2

emmas96 commited on May 24, 2023

rename function to display protein

ce1a0a5

emmas96 commited on May 24, 2023

predict protein sequence using esm from bio-embeddings

2f637fc

emmas96 commited on May 24, 2023

check basic dependency in new version

e869110

emmas96 commited on May 24, 2023

temporarily disable display dti

f58b2a4

emmas96 commited on May 20, 2023

add dummy retrieval page

9e6028d

emmas96 commited on May 20, 2023

fix bug in bio_embedding usage

09b62c7

emmas96 commited on Apr 25, 2023

revert to check seqvec from bio_embeddings allennlp only

ae5b369

emmas96 commited on Apr 25, 2023

redirect SeqVec

d847984

emmas96 commited on Apr 25, 2023

use precomputed embeddings

1107c98

emmas96 commited on Apr 6, 2023

change to internal default CDDD model

f398b03

emmas96 commited on Apr 5, 2023

Update app.py

c442b67

emmas96 commited on Apr 5, 2023

Update app.py

7e90759

emmas96 commited on Apr 5, 2023

load molecule encoder checkpoints from HuggingFace model card

1a8ab89

emmas96 commited on Apr 5, 2023

bug

a3c68c5

emmas96 commited on Apr 5, 2023

Update app.py

3bc3619

emmas96 commited on Apr 5, 2023

Update app.py

7b657a7

emmas96 commited on Apr 5, 2023

check loading of UniRep parameters

6a2a788

emmas96 commited on Apr 5, 2023

bug

152ae56

emmas96 commited on Apr 5, 2023

add dummy encoders for drug and target

ef4a36f

emmas96 commited on Apr 5, 2023

optional cddd embedding

2abf58c

emmas96 commited on Apr 5, 2023

omit protein display temporarily

7f14dcf

emmas96 commited on Apr 4, 2023

Update app.py

97213c3

emmas96 commited on Apr 4, 2023

remove overview

773fac0

emmas96 commited on Apr 4, 2023

include display image

39ca037

emmas96 commited on Apr 4, 2023

initialize simple plotting of drug

40cf9b4

emmas96 commited on Apr 4, 2023

import rdkit

c0e52ad

emmas96 commited on Apr 4, 2023

try basic requirements

72f9629

emmas96 commited on Apr 4, 2023

clean header

d5d696e

emmas96 commited on Apr 4, 2023

update page header

501c3b1

emmas96 commited on Apr 4, 2023

remove torch dependency

372f84d

emmas96 commited on Apr 4, 2023

Update app.py

de4e1d1

emmas96 commited on Apr 4, 2023

simplify dependency to streamlit

42abceb

emmas96 commited on Apr 4, 2023

Update app.py

951c5f5

emmas96 commited on Apr 3, 2023

update about page

afba6b8

emmas96 commited on Apr 3, 2023

update page header

fc729c7

emmas96 commited on Apr 3, 2023

update about page

5b730e0

emmas96 commited on Apr 3, 2023

simle

bc3d031

emmas96 commited on Apr 3, 2023

skeleton structure

89f9a8d

emmas96 commited on Mar 31, 2023

Commit History

add warnings and progress bars 499faaf

repeat dummy smiles in retrieval 483853f

temporarily simplify protein encoding 2d2e3fe

bug in retrieval 51218b3

update illustrations of respective encoders 65c318c

update interface to choose target in retrieval 94a9538

update retrieval 3c1ebe4

update comments for planned future functionalities 63ce71b

try esm fold 8d25d5d

try protein sequence prediction directly with esm package 39315d2

rename function to display protein ce1a0a5

predict protein sequence using esm from bio-embeddings 2f637fc

check basic dependency in new version e869110

temporarily disable display dti f58b2a4

add dummy retrieval page 9e6028d

fix bug in bio_embedding usage 09b62c7

revert to check seqvec from bio_embeddings allennlp only ae5b369

redirect SeqVec d847984

use precomputed embeddings 1107c98

change to internal default CDDD model f398b03

Update app.py c442b67

Update app.py 7e90759

load molecule encoder checkpoints from HuggingFace model card 1a8ab89

bug a3c68c5

Update app.py 3bc3619

Update app.py 7b657a7

check loading of UniRep parameters 6a2a788

bug 152ae56

add dummy encoders for drug and target ef4a36f

optional cddd embedding 2abf58c

omit protein display temporarily 7f14dcf

Update app.py 97213c3

remove overview 773fac0

include display image 39ca037

initialize simple plotting of drug 40cf9b4

import rdkit c0e52ad

try basic requirements 72f9629

clean header d5d696e

update page header 501c3b1

remove torch dependency 372f84d

Update app.py de4e1d1

simplify dependency to streamlit 42abceb

Update app.py 951c5f5

update about page afba6b8

update page header fc729c7

update about page 5b730e0

simle bc3d031

skeleton structure 89f9a8d

add warnings and progress bars

499faaf

repeat dummy smiles in retrieval

483853f

temporarily simplify protein encoding

2d2e3fe

bug in retrieval

51218b3

update illustrations of respective encoders

65c318c

update interface to choose target in retrieval

94a9538

update retrieval

3c1ebe4

update comments for planned future functionalities

63ce71b

try esm fold

8d25d5d

try protein sequence prediction directly with esm package

39315d2

rename function to display protein

ce1a0a5

predict protein sequence using esm from bio-embeddings

2f637fc

check basic dependency in new version

e869110

temporarily disable display dti

f58b2a4

add dummy retrieval page

9e6028d

fix bug in bio_embedding usage

09b62c7

revert to check seqvec from bio_embeddings allennlp only

ae5b369

redirect SeqVec

d847984

use precomputed embeddings

1107c98

change to internal default CDDD model

f398b03

Update app.py

c442b67

Update app.py

7e90759

load molecule encoder checkpoints from HuggingFace model card

1a8ab89

bug

a3c68c5

Update app.py

3bc3619

Update app.py

7b657a7

check loading of UniRep parameters

6a2a788

bug

152ae56

add dummy encoders for drug and target

ef4a36f

optional cddd embedding

2abf58c

omit protein display temporarily

7f14dcf

Update app.py

97213c3

remove overview

773fac0

include display image

39ca037

initialize simple plotting of drug

40cf9b4

import rdkit

c0e52ad

try basic requirements

72f9629

clean header

d5d696e

update page header

501c3b1

remove torch dependency

372f84d

Update app.py

de4e1d1

simplify dependency to streamlit

42abceb

Update app.py

951c5f5

update about page

afba6b8

update page header

fc729c7

update about page

5b730e0

simle

bc3d031

skeleton structure

89f9a8d