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emmas96
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hyper-dti
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2d2e3fe
hyper-dti
Commit History
temporarily simplify protein encoding
2d2e3fe
emmas96
commited on
May 24, 2023
bug in retrieval
51218b3
emmas96
commited on
May 24, 2023
running versus finished encoder illustrations
3c1a27d
emmas96
commited on
May 24, 2023
update illustrations of respective encoders
65c318c
emmas96
commited on
May 24, 2023
illustrate molecule encoder
99a9694
emmas96
commited on
May 24, 2023
illustrate protein encoder
75506e0
emmas96
commited on
May 24, 2023
update hyperpcm overview figure
9de877c
emmas96
commited on
May 24, 2023
update interface to choose target in retrieval
94a9538
emmas96
commited on
May 24, 2023
update retrieval
3c1ebe4
emmas96
commited on
May 24, 2023
temporarily comment out fold dependencies
7c52b50
emmas96
commited on
May 24, 2023
update comments for planned future functionalities
63ce71b
emmas96
commited on
May 24, 2023
add torch
9cefb25
emmas96
commited on
May 24, 2023
attempt to fix missing dependencies for esm fold
0a80a05
emmas96
commited on
May 24, 2023
try esm fold
8d25d5d
emmas96
commited on
May 24, 2023
try protein sequence prediction directly with esm package
39315d2
emmas96
commited on
May 24, 2023
rename function to display protein
ce1a0a5
emmas96
commited on
May 24, 2023
predict protein sequence using esm from bio-embeddings
2f637fc
emmas96
commited on
May 24, 2023
upgrade sdk version
942d70b
emmas96
commited on
May 24, 2023
revert
7b1983b
emmas96
commited on
May 24, 2023
try fix in updated version
e1c67d1
emmas96
commited on
May 24, 2023
check basic dependency in new version
e869110
emmas96
commited on
May 24, 2023
temporarily disable display dti
f58b2a4
emmas96
commited on
May 20, 2023
add dummy retrieval page
9e6028d
emmas96
commited on
May 20, 2023
try to add esm
0c85072
emmas96
commited on
Apr 25, 2023
fix bug in bio_embedding usage
09b62c7
emmas96
commited on
Apr 25, 2023
add base bio_embeddings
cad2051
emmas96
commited on
Apr 25, 2023
try bio_embeddings with only allennlp for SeqVec
d140399
emmas96
commited on
Apr 25, 2023
revert to check seqvec from bio_embeddings allennlp only
ae5b369
emmas96
commited on
Apr 25, 2023
rdkit required for molecule visualization
1473877
emmas96
commited on
Apr 25, 2023
clean to check UniRep
0f9ba1c
emmas96
commited on
Apr 25, 2023
revert requirements
7f14736
emmas96
commited on
Apr 25, 2023
Update requirements.txt
868ed13
emmas96
commited on
Apr 25, 2023
downgrade scikit-learn to 0.21.3 for MolBERT requirement
0ce54f4
emmas96
commited on
Apr 25, 2023
add MolBERT
7d1a024
emmas96
commited on
Apr 25, 2023
redirect SeqVec
d847984
emmas96
commited on
Apr 25, 2023
attempt work around for SeqVec
ca0a8fe
emmas96
commited on
Apr 25, 2023
use precomputed embeddings
1107c98
emmas96
commited on
Apr 6, 2023
Update requirements.txt
e181d98
emmas96
commited on
Apr 6, 2023
Update README.md
052129b
emmas96
commited on
Apr 6, 2023
Update README.md
c8d0a85
emmas96
commited on
Apr 6, 2023
Update README.md
84c5ec4
emmas96
commited on
Apr 6, 2023
Update README.md
1670900
emmas96
commited on
Apr 6, 2023
Update requirements.txt
49fcf65
emmas96
commited on
Apr 5, 2023
change python version for CDDD requirement
e38d443
emmas96
commited on
Apr 5, 2023
change to internal default CDDD model
f398b03
emmas96
commited on
Apr 5, 2023
Delete src/encoders/cddd/tmp
c9956cd
emmas96
commited on
Apr 5, 2023
try to upload cddd default model
5661241
emmas96
commited on
Apr 5, 2023
create folder for cddd default model
7086819
emmas96
commited on
Apr 5, 2023
Update app.py
c442b67
emmas96
commited on
Apr 5, 2023
Update app.py
7e90759
emmas96
commited on
Apr 5, 2023
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