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hyper-dti

Commit History

delete
25a53ab

emmas96 commited on

delete
e3b08a5

emmas96 commited on

delete
08d88ea

emmas96 commited on

delete temporary file
8eaaf59

emmas96 commited on

move figures
075e9bd

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make figures folder
fb58ec6

emmas96 commited on

new attempt at displaying protein
1753f35

emmas96 commited on

final touches to dummy functionalities
601b6c8

emmas96 commited on

update quality of overview figure
65ed60c

emmas96 commited on

small bugs
9574464

emmas96 commited on

reformulate
818c6db

emmas96 commited on

bug
3bd2944

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reformulations
b318bc6

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indentation bug
4011e18

emmas96 commited on

add warnings and progress bars
499faaf

emmas96 commited on

repeat dummy smiles in retrieval
483853f

emmas96 commited on

temporarily simplify protein encoding
2d2e3fe

emmas96 commited on

bug in retrieval
51218b3

emmas96 commited on

running versus finished encoder illustrations
3c1a27d

emmas96 commited on

update illustrations of respective encoders
65c318c

emmas96 commited on

illustrate molecule encoder
99a9694

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illustrate protein encoder
75506e0

emmas96 commited on

update hyperpcm overview figure
9de877c

emmas96 commited on

update interface to choose target in retrieval
94a9538

emmas96 commited on

update retrieval
3c1ebe4

emmas96 commited on

temporarily comment out fold dependencies
7c52b50

emmas96 commited on

update comments for planned future functionalities
63ce71b

emmas96 commited on

add torch
9cefb25

emmas96 commited on

attempt to fix missing dependencies for esm fold
0a80a05

emmas96 commited on

try esm fold
8d25d5d

emmas96 commited on

try protein sequence prediction directly with esm package
39315d2

emmas96 commited on

rename function to display protein
ce1a0a5

emmas96 commited on

predict protein sequence using esm from bio-embeddings
2f637fc

emmas96 commited on

upgrade sdk version
942d70b

emmas96 commited on

revert
7b1983b

emmas96 commited on

try fix in updated version
e1c67d1

emmas96 commited on

check basic dependency in new version
e869110

emmas96 commited on

temporarily disable display dti
f58b2a4

emmas96 commited on

add dummy retrieval page
9e6028d

emmas96 commited on

try to add esm
0c85072

emmas96 commited on

fix bug in bio_embedding usage
09b62c7

emmas96 commited on

add base bio_embeddings
cad2051

emmas96 commited on

try bio_embeddings with only allennlp for SeqVec
d140399

emmas96 commited on

revert to check seqvec from bio_embeddings allennlp only
ae5b369

emmas96 commited on

rdkit required for molecule visualization
1473877

emmas96 commited on

clean to check UniRep
0f9ba1c

emmas96 commited on

revert requirements
7f14736

emmas96 commited on

Update requirements.txt
868ed13

emmas96 commited on

downgrade scikit-learn to 0.21.3 for MolBERT requirement
0ce54f4

emmas96 commited on

add MolBERT
7d1a024

emmas96 commited on