change to internal default CDDD model
Browse files
app.py
CHANGED
@@ -62,11 +62,8 @@ def display_dti():
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)
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if selected_encoder == 'CDDD':
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from cddd.inference import InferenceModel
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REPO_ID = "emmas96/hyperpcm"
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checkpoint_path = hf_hub_download(REPO_ID, CDDD_MODEL_DIR)
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cddd_model = InferenceModel(checkpoint_path)
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embedding = cddd_model.seq_to_emb([smiles])
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elif selected_encoder == 'MolBERT':
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from molbert.utils.featurizer.molbert_featurizer import MolBertFeaturizer
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@@ -122,7 +119,7 @@ def display_dti():
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st.write(embedding)
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"""
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sequence = st.text_input("Enter the amino-acid sequence of the query protein target", value="HXHVWPVQDAKARFSEFLDACITEGPQIVSRRGAEEAVLVPIGEWRRLQAAA", placeholder="HXHVWPVQDAKARFSEFLDACITEGPQIVSRRGAEEAVLVPIGEWRRLQAAA")
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)
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if selected_encoder == 'CDDD':
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from cddd.inference import InferenceModel
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+
CDDD_MODEL_DIR = 'src/encoders/cddd'
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cddd_model = InferenceModel(CDDD_MODEL_DIR)
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embedding = cddd_model.seq_to_emb([smiles])
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elif selected_encoder == 'MolBERT':
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from molbert.utils.featurizer.molbert_featurizer import MolBertFeaturizer
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st.write(embedding)
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+
def display_protein():
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"""
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sequence = st.text_input("Enter the amino-acid sequence of the query protein target", value="HXHVWPVQDAKARFSEFLDACITEGPQIVSRRGAEEAVLVPIGEWRRLQAAA", placeholder="HXHVWPVQDAKARFSEFLDACITEGPQIVSRRGAEEAVLVPIGEWRRLQAAA")
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